6L7O image
Deposition Date 2019-11-02
Release Date 2020-02-19
Last Version Date 2024-05-29
Entry Detail
PDB ID:
6L7O
Keywords:
Title:
cryo-EM structure of cyanobacteria Fd-NDH-1L complex
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 1
Gene (Uniprot):ndhA
Chain IDs:A
Chain Length:372
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 2
Gene (Uniprot):ndhB
Chain IDs:B
Chain Length:515
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 3
Gene (Uniprot):ndhC
Chain IDs:C
Chain Length:132
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase chain 4 1
Gene (Uniprot):ndhD1
Chain IDs:D
Chain Length:529
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit 4L
Gene (Uniprot):ndhE
Chain IDs:E
Chain Length:101
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NADH dehydrogenase subunit 5
Gene (Uniprot):ndhF1
Chain IDs:F
Chain Length:656
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NADH-quinone oxidoreductase subunit J
Gene (Uniprot):ndhG
Chain IDs:G
Chain Length:200
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit H
Gene (Uniprot):ndhH
Chain IDs:H
Chain Length:394
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit I
Gene (Uniprot):ndhI
Chain IDs:I
Chain Length:196
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit J
Gene (Uniprot):ndhJ
Chain IDs:J
Chain Length:168
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit K
Gene (Uniprot):ndhK
Chain IDs:K
Chain Length:237
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit L
Gene (Uniprot):ndhL
Chain IDs:L
Chain Length:76
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit M
Gene (Uniprot):ndhM
Chain IDs:M
Chain Length:111
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit N
Gene (Uniprot):ndhN
Chain IDs:N
Chain Length:150
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit O
Gene (Uniprot):ndhO
Chain IDs:O
Chain Length:70
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit P
Chain IDs:P
Chain Length:44
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:NAD(P)H-quinone oxidoreductase subunit Q
Chain IDs:Q
Chain Length:45
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:Ferredoxin-1
Gene (Uniprot):petF1
Chain IDs:R
Chain Length:98
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:Tlr0636 protein
Gene (Uniprot):tlr0636
Chain IDs:S
Chain Length:110
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Polymer Type:polypeptide(L)
Molecule:Tlr0472 protein
Gene (Uniprot):tlr0472
Chain IDs:T (auth: V)
Chain Length:146
Number of Molecules:1
Biological Source:Thermosynechococcus elongatus BP-1
Primary Citation
Structural insights into NDH-1 mediated cyclic electron transfer.
Nat Commun 11 888 888 (2020)
PMID: 32060291 DOI: 10.1038/s41467-020-14732-z

Abstact

NDH-1 is a key component of the cyclic-electron-transfer around photosystem I (PSI CET) pathway, an important antioxidant mechanism for efficient photosynthesis. Here, we report a 3.2-Å-resolution cryo-EM structure of the ferredoxin (Fd)-NDH-1L complex from the cyanobacterium Thermosynechococcus elongatus. The structure reveals three β-carotene and fifteen lipid molecules in the membrane arm of NDH-1L. Regulatory oxygenic photosynthesis-specific (OPS) subunits NdhV, NdhS and NdhO are close to the Fd-binding site whilst NdhL is adjacent to the plastoquinone (PQ) cavity, and they play different roles in PSI CET under high-light stress. NdhV assists in the binding of Fd to NDH-1L and accelerates PSI CET in response to short-term high-light exposure. In contrast, prolonged high-light irradiation switches on the expression and assembly of the NDH-1MS complex, which likely contains no NdhO to further accelerate PSI CET and reduce ROS production. We propose that this hierarchical mechanism is necessary for the survival of cyanobacteria in an aerobic environment.

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