6L77 image
Deposition Date 2019-10-31
Release Date 2020-06-03
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6L77
Title:
Crystal structure of MS5 from Brassica napus
Biological Source:
Source Organism:
Brassica napus (Taxon ID: 3708)
Method Details:
Experimental Method:
Resolution:
1.90 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 32 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MS5a
Gene (Uniprot):MS5
Chain IDs:A
Chain Length:242
Number of Molecules:1
Biological Source:Brassica napus
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Structural analysis of the meiosis-related protein MS5 reveals non-canonical papain enhancement by cystatin-like folds.
Febs Lett. 594 2462 2471 (2020)
PMID: 32415887 DOI: 10.1002/1873-3468.13817

Abstact

MS5 is a meiosis-related protein belonging to the Brassicaceae-specific domain of unknown function family and characterized by the MS5 superfamily domain (MSD). In this study, we elucidated the three-dimensional crystal structure and potential biochemical function of the MSD. It was observed that the MSD adopts a cystatin-like fold, mainly consisting of a central α-helix and four- or five-stranded antiparallel β-sheets that wrap around it. However, unlike cystatins, which inhibit cysteine proteases, the MSD displayed allosteric activation of papain. We believe that our study provides insight into novel mechanisms of proteolytic enzyme regulation and may serve as a basis for functional studies of the MS5 family proteins in plants.

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Primary Citation of related structures