6L6Y image
Deposition Date 2019-10-29
Release Date 2020-11-04
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6L6Y
Keywords:
DNA BINDING PROTEIN/DNA,TRANSCRIPTION
Title:
Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Escherichia coli BL21(DE3)
Method Details:
Experimental Method:
X-RAY DIFFRACTION
Resolution:
3.00 Å
R-Value Free:
0.25
R-Value Work:
0.18
R-Value Observed:
0.19
Space Group:
P 21 21 21
6L6Y validation report
Macromolecular Entities
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(P*GP*GP*TP*CP*TP*CP*TP*AP*TP*TP*GP*TP*CP*CP*TP*G)-3')
Chain IDs:A, D (auth: C)
Chain Length:16
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (5'-D(*CP*CP*AP*GP*GP*AP*CP*AP*AP*TP*AP*GP*AP*GP*AP*C)-3')
Chain IDs:B, E
Chain Length:16
Number of Molecules:2
Biological Source:Homo sapiens
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Transcription factor SOX-17
Gene (Uniprot):Sox17
Mutations:E122K
Chain IDs:C (auth: D), F
Chain Length:83
Number of Molecules:2
Biological Source:Mus musculus
UniProt ID:Q61473 Pfam ID:PF00505
Primary Citation
Crystal Structure of Pluripotency Reprogramming Factor Sox17 mutant (Sox17EK) HMG Domain bound to DNA
To Be Published ? ? ? (?)
Primary Citation of related structures
6L6Y