6L6X image
Entry Detail
PDB ID:
6L6X
Keywords:
Title:
The structure of ScoE with substrate
Biological Source:
PDB Version:
Deposition Date:
2019-10-29
Release Date:
2020-03-04
Method Details:
Experimental Method:
Resolution:
2.18 Å
R-Value Free:
0.18
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 42
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:ScoE protein
Chain IDs:A
Chain Length:346
Number of Molecules:1
Biological Source:Streptomyces coeruleorubidus
Primary Citation
Pathway from N-Alkylglycine to Alkylisonitrile Catalyzed by Iron(II) and 2-Oxoglutarate-Dependent Oxygenases.
Angew.Chem.Int.Ed.Engl. 59 7367 7371 (2020)
PMID: 32074393 DOI: 10.1002/anie.201914896

Abstact

N-alkylisonitrile, a precursor to isonitrile-containing lipopeptides, is biosynthesized by decarboxylation-assisted -N≡C group (isonitrile) formation by using N-alkylglycine as the substrate. This reaction is catalyzed by iron(II) and 2-oxoglutarate (Fe/2OG) dependent enzymes. Distinct from typical oxygenation or halogenation reactions catalyzed by this class of enzymes, installation of the isonitrile group represents a novel reaction type for Fe/2OG enzymes that involves a four-electron oxidative process. Reported here is a plausible mechanism of three Fe/2OG enzymes, Sav607, ScoE and SfaA, which catalyze isonitrile formation. The X-ray structures of iron-loaded ScoE in complex with its substrate and the intermediate, along with biochemical and biophysical data reveal that -N≡C bond formation involves two cycles of Fe/2OG enzyme catalysis. The reaction starts with an FeIV -oxo-catalyzed hydroxylation. It is likely followed by decarboxylation-assisted desaturation to complete isonitrile installation.

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