6L2W image
Entry Detail
PDB ID:
6L2W
Title:
Crystal structure of a novel fold protein Gp72 from the freshwater cyanophage Mic1
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-10-07
Release Date:
2020-05-13
Method Details:
Experimental Method:
Resolution:
2.29 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.20
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:freshwater cyanophage protein
Chain IDs:A, B
Chain Length:124
Number of Molecules:2
Biological Source:Microcystis phage Mic1
Primary Citation
Crystal structure of a novel fold protein Gp72 from the freshwater cyanophage Mic1.
Proteins 88 1226 1232 (2020)
PMID: 32337767 DOI: 10.1002/prot.25896

Abstact

Cyanophages, widespread in aquatic systems, are a class of viruses that specifically infect cyanobacteria. Though they play important roles in modulating the homeostasis of cyanobacterial populations, little is known about the freshwater cyanophages, especially those hypothetical proteins of unknown function. Mic1 is a freshwater siphocyanophage isolated from the Lake Chaohu. It encodes three hypothetical proteins Gp65, Gp66, and Gp72, which share an identity of 61.6% to 83%. However, we find these three homologous proteins differ from each other in oligomeric state. Moreover, we solve the crystal structure of Gp72 at 2.3 Å, which represents a novel fold in the α + β class. Structural analyses combined with redox assays enable us to propose a model of disulfide bond mediated oligomerization for Gp72. Altogether, these findings provide structural and biochemical basis for further investigations on the freshwater cyanophage Mic1.

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