6KYK image
Deposition Date 2019-09-19
Release Date 2019-12-04
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6KYK
Title:
Crystal structure of Shank3 NTD-ANK mutant in complex with Rap1
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.82 Å
R-Value Free:
0.29
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:SH3 and multiple ankyrin repeat domains protein 3
Gene (Uniprot):Shank3
Mutations:L231R,F304Y
Chain IDs:A, B
Chain Length:374
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Ras-related protein Rap-1b
Gene (Uniprot):RAP1B
Chain IDs:C, D, E, F
Chain Length:170
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Shank3 Binds to and Stabilizes the Active Form of Rap1 and HRas GTPases via Its NTD-ANK Tandem with Distinct Mechanisms.
Structure 28 290 ? (2020)
PMID: 31879129 DOI: 10.1016/j.str.2019.11.018

Abstact

Shank1/2/3, major scaffold proteins in excitatory synapses, are frequently mutated in patients with psychiatric disorders. Although the Shank N-terminal domain and ankyrin repeats domain tandem (NTD-ANK) is known to bind to Ras and Rap1, the molecular mechanism underlying and functional significance of the bindings in synapses are unknown. Here, we demonstrate that Shank3 NTD-ANK specifically binds to the guanosine triphosphate (GTP)-bound form of HRas and Rap1. In addition to the canonical site mediated by the Ras-association domain and common to both GTPases, Shank3 contains an unconventional Rap1 binding site formed by NTD and ANK together. Binding of Shank3 to the GTP-loaded Rap1 slows down its GTP hydrolysis by SynGAP. We further show that the interactions between Shank3 and HRas/Rap1 at excitatory synapses are promoted by synaptic activation. Thus, Shank3 may be able to modulate signaling of the Ras family proteins via directly binding to and stabilizing the GTP-bound form of the enzymes.

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