6KYH image
Deposition Date 2019-09-18
Release Date 2019-12-04
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6KYH
Title:
Crystal structure of Shank3 NTD-ANK A42K mutant in complex with HRas
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
P 1 21 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:SH3 and multiple ankyrin repeat domains protein 3
Gene (Uniprot):Shank3
Mutagens:A42K,L231R,F304Y
Chain IDs:A, B, C, D
Chain Length:361
Number of Molecules:4
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:GTPase HRas
Gene (Uniprot):Hras
Chain IDs:E (auth: F), F (auth: G), G (auth: H), H (auth: E)
Chain Length:171
Number of Molecules:4
Biological Source:Mus musculus
Primary Citation
Shank3 Binds to and Stabilizes the Active Form of Rap1 and HRas GTPases via Its NTD-ANK Tandem with Distinct Mechanisms.
Structure 28 290 ? (2020)
PMID: 31879129 DOI: 10.1016/j.str.2019.11.018

Abstact

Shank1/2/3, major scaffold proteins in excitatory synapses, are frequently mutated in patients with psychiatric disorders. Although the Shank N-terminal domain and ankyrin repeats domain tandem (NTD-ANK) is known to bind to Ras and Rap1, the molecular mechanism underlying and functional significance of the bindings in synapses are unknown. Here, we demonstrate that Shank3 NTD-ANK specifically binds to the guanosine triphosphate (GTP)-bound form of HRas and Rap1. In addition to the canonical site mediated by the Ras-association domain and common to both GTPases, Shank3 contains an unconventional Rap1 binding site formed by NTD and ANK together. Binding of Shank3 to the GTP-loaded Rap1 slows down its GTP hydrolysis by SynGAP. We further show that the interactions between Shank3 and HRas/Rap1 at excitatory synapses are promoted by synaptic activation. Thus, Shank3 may be able to modulate signaling of the Ras family proteins via directly binding to and stabilizing the GTP-bound form of the enzymes.

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