6KU3 image
Deposition Date 2019-08-30
Release Date 2020-05-13
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6KU3
Title:
Crystal structure of gibberellin 2-oxidase3 (GA2ox3)in rice
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.15 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Gibberellin 2-beta-dioxygenase 3
Gene (Uniprot):GA2OX3
Chain IDs:A, B, C, D
Chain Length:327
Number of Molecules:4
Biological Source:Oryza sativa subsp. japonica
Primary Citation
A common allosteric mechanism regulates homeostatic inactivation of auxin and gibberellin.
Nat Commun 11 2143 2143 (2020)
PMID: 32358569 DOI: 10.1038/s41467-020-16068-0

Abstact

Allosteric regulation is protein activation by effector binding at a site other than the active site. Here, we show via X-ray structural analysis of gibberellin 2-oxidase 3 (GA2ox3), and auxin dioxygenase (DAO), that such a mechanism maintains hormonal homeostasis in plants. Both enzymes form multimers by interacting via GA4 and indole-3-acetic acid (IAA) at their binding interface. Via further functional analyses we reveal that multimerization of these enzymes gradually proceeds with increasing GA4 and IAA concentrations; multimerized enzymes have higher specific activities than monomer forms, a system that should favour the maintenance of homeostasis for these phytohormones. Molecular dynamic analysis suggests a possible mechanism underlying increased GA2ox3 activity by multimerization-GA4 in the interface of oligomerized GA2ox3s may be able to enter the active site with a low energy barrier. In summary, homeostatic systems for maintaining GA and IAA levels, based on a common allosteric mechanism, appear to have developed independently.

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