6KSW image
Deposition Date 2019-08-26
Release Date 2020-08-26
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6KSW
Title:
Cryo-EM structure of the human concentrative nucleoside transporter CNT3
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.60 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Solute carrier family 28 member 3
Gene (Uniprot):SLC28A3
Chain IDs:A (auth: C), B (auth: A), C (auth: B)
Chain Length:632
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Cryo-EM structure of the human concentrative nucleoside transporter CNT3.
Plos Biol. 18 e3000790 e3000790 (2020)
PMID: 32776918 DOI: 10.1371/journal.pbio.3000790

Abstact

Concentrative nucleoside transporters (CNTs), members of the solute carrier (SLC) 28 transporter family, facilitate the salvage of nucleosides and therapeutic nucleoside derivatives across the plasma membrane. Despite decades of investigation, the structures of human CNTs remain unknown. We determined the cryogenic electron microscopy (cryo-EM) structure of human CNT (hCNT) 3 at an overall resolution of 3.6 Å. As with its bacterial homologs, hCNT3 presents a trimeric architecture with additional N-terminal transmembrane helices to stabilize the conserved central domains. The conserved binding sites for the substrate and sodium ions unravel the selective nucleoside transport and distinct coupling mechanism. Structural comparison of hCNT3 with bacterial homologs indicates that hCNT3 is stabilized in an inward-facing conformation. This study provides the molecular determinants for the transport mechanism of hCNTs and potentially facilitates the design of nucleoside drugs.

Legend

Protein

Chemical

Disease

Primary Citation of related structures