6KS0 image
Deposition Date 2019-08-22
Release Date 2020-08-19
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6KS0
Title:
Crystal structure of the human adiponectin receptor 1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.79 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Adiponectin receptor protein 1
Gene (Uniprot):ADIPOR1
Chain IDs:A
Chain Length:305
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:The heavy chain variable domain (Antibody)
Chain IDs:B (auth: H)
Chain Length:119
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:The light chain variable domain (Antibody)
Chain IDs:C (auth: L)
Chain Length:107
Number of Molecules:1
Biological Source:Mus musculus
Primary Citation
Human adiponectin receptor AdipoR1 assumes closed and open structures.
Commun Biol 3 446 446 (2020)
PMID: 32796916 DOI: 10.1038/s42003-020-01160-4

Abstact

The human adiponectin receptors, AdipoR1 and AdipoR2, are key anti-diabetic molecules. We previously reported the crystal structures of human AdipoR1 and AdipoR2, revealing that their seven transmembrane helices form an internal closed cavity (the closed form). In this study, we determined the crystal structure of the D208A variant AdipoR1, which is fully active with respect to the major downstream signaling. Among the three molecules in the asymmetric unit, two assume the closed form, and the other adopts the open form with large openings in the internal cavity. Between the closed- and open-form structures, helices IV and V are tilted with their intracellular ends shifted by about 4 and 11 Å, respectively. Furthermore, we reanalyzed our previous wild-type AdipoR1 diffraction data, and determined a 44:56 mixture of the closed and open forms, respectively. Thus, we have clarified the closed-open interconversion of AdipoR1, which may be relevant to its functional mechanism(s).

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