6KRL image
Deposition Date 2019-08-22
Release Date 2020-06-17
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6KRL
Keywords:
Title:
Crystal structure of GH30 xylanase B from Talaromyces cellulolyticus expressed by Pichia pastoris
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.19
R-Value Work:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Mating factor alpha,GH30 Xylanase B
Chain IDs:A
Chain Length:545
Number of Molecules:1
Biological Source:Saccharomyces uvarum, Talaromyces cellulolyticus CF-2612
Primary Citation
Substrate recognition by a bifunctional GH30-7 xylanase B from Talaromyces cellulolyticus.
Febs Open Bio 10 1180 1189 (2020)
PMID: 32359208 DOI: 10.1002/2211-5463.12873

Abstact

Xylanase B, a member of subfamily 7 of the GH30 (glycoside hydrolase family 30) from Talaromyces cellulolyticus (TcXyn30B), is a bifunctional enzyme with glucuronoxylanase and xylobiohydrolase activities. In the present study, crystal structures of the native enzyme and the enzyme-product complex of TcXyn30B expressed in Pichia pastoris were determined at resolutions of 1.60 and 1.65 Å, respectively. The enzyme complexed with 22 -(4-O-methyl-α-d-glucuronyl)-xylobiose (U4m2 X) revealed that TcXyn30B strictly recognizes both the C-6 carboxyl group and the 4-O-methyl group of the 4-O-methyl-α-d-glucuronyl side chain by the conserved residues in GH30-7 endoxylanases. The crystal structure and site-directed mutagenesis indicated that Asn-93 on the β2-α2-loop interacts with the non-reducing end of the xylose residue at subsite-2 and is likely to be involved in xylobiohydrolase activity. These findings provide structural insight into the mechanisms of substrate recognition of GH30-7 glucuronoxylanase and xylobiohydrolase.

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