6KRG image
Entry Detail
PDB ID:
6KRG
Title:
Crystal structure of sfGFP Y182TMSiPhe
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-08-21
Release Date:
2020-09-09
Method Details:
Experimental Method:
Resolution:
1.40 Å
R-Value Free:
0.17
R-Value Work:
0.14
R-Value Observed:
0.14
Space Group:
I 41
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Green fluorescent protein
Mutations:Y182T
Chain IDs:A
Chain Length:243
Number of Molecules:1
Biological Source:Aequorea victoria
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
CRO A THR chromophore
Primary Citation
DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl 1 H-NMR probe.
Nat Commun 11 4857 4857 (2020)
PMID: 32978402 DOI: 10.1038/s41467-020-18433-5

Abstact

Characterization of the dynamic conformational changes in membrane protein signaling complexes by nuclear magnetic resonance (NMR) spectroscopy remains challenging. Here we report the site-specific incorporation of 4-trimethylsilyl phenylalanine (TMSiPhe) into proteins, through genetic code expansion. Crystallographic analysis revealed structural changes that reshaped the TMSiPhe-specific amino-acyl tRNA synthetase active site to selectively accommodate the trimethylsilyl (TMSi) group. The unique up-field 1H-NMR chemical shift and the highly efficient incorporation of TMSiPhe enabled the characterization of multiple conformational states of a phospho-β2 adrenergic receptor/β-arrestin-1(β-arr1) membrane protein signaling complex, using only 5 μM protein and 20 min of spectrum accumulation time. We further showed that extracellular ligands induced conformational changes located in the polar core or ERK interaction site of β-arr1 via direct receptor transmembrane core interactions. These observations provided direct delineation and key mechanism insights that multiple receptor ligands were able to induce distinct functionally relevant conformational changes of arrestin.

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Primary Citation of related structures