6KRB image
Deposition Date 2019-08-21
Release Date 2020-05-13
Last Version Date 2024-11-13
Entry Detail
PDB ID:
6KRB
Keywords:
Title:
High resolution crystal structure of an Acylphosphatase protein cage
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.38 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 31
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Acylphosphatase
Gene (Uniprot):acyP
Chain IDs:A, B, C, D, E, F, G, H, I, J, K, L
Chain Length:91
Number of Molecules:12
Biological Source:Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395)
Primary Citation
High resolution structure of Vibrio cholerae acylphosphatase (VcAcP) cage: Identification of drugs, location of its binding site and engineering to facilitate cage formation.
Biochem.Biophys.Res.Commun. 523 348 353 (2020)
PMID: 31866010 DOI: 10.1016/j.bbrc.2019.12.060

Abstact

Protein cages have recently emerged as an extraordinary drug-delivery system due to its biocompatibility, biodegradability, low toxicity, ease to manipulate and engineer. We have reported earlier the formation and architecture of a do-decameric cage-like architecture of Vibrio cholerae acylphosphatase (VcAcP) at 3.1 Å. High resolution (2.4 Å) crystal structure of VcAcP cage, reported here, illuminates a potential binding site for sulphate/phosphate containing drugs whereas analysis of its subunit association and interfaces indicates high potential for cage engineering. Tryptophan quenching studies indeed discloses noteworthy binding with various sulphate/phosphate containing nucleotide-based drugs and vitamin B6 (PLP) demonstrating that exterior surface of VcAcP protein cage can be exploited as multifunctional carrier. Moreover, a quadruple mutant L30C/T68C/N40C/L81C-VcAcP (QM-VcAcP) capable to form an intricate disulphide bonded VcAcP cage has been designed. SEC, SDS-PAGE analysis and DLS experiment confirmed cysteine mediated engineered VcAcP cage formation.

Legend

Protein

Chemical

Disease

Primary Citation of related structures