6KR5 image
Deposition Date 2019-08-21
Release Date 2020-09-09
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6KR5
Keywords:
Title:
Crystal structure of O-Acetyl Serine Sulfhydrylase isoform 3 from Entamoeba histolytica
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.54 Å
R-Value Free:
0.21
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Cysteine synthase 3
Gene (Uniprot):CS 3
Chain IDs:A, B
Chain Length:338
Number of Molecules:2
Biological Source:Entamoeba histolytica
Ligand Molecules
Primary Citation
Crystal structure of O-Acetylserine sulfhydralase (OASS) isoform 3 from Entamoeba histolytica: Pharmacophore-based virtual screening and validation of novel inhibitors.
Eur.J.Med.Chem. 192 112157 112157 (2020)
PMID: 32145643 DOI: 10.1016/j.ejmech.2020.112157

Abstact

The l-cysteine is crucial for growth, survival, defense against oxidative stress, and pathogenesis of Entamoeba histolytica. The de novo biosynthesis of l-cysteine in E. histolytica, has a two-step pathway, where O-acetylserine sulfhydrylase (OASS) catalyses the last step by converting OAS to l-cysteine. This pathway is absent in humans and hence represents a promising target for novel therapeutics. E. histolytica expresses three isoforms of OASS and knockdown studies showed the importance of these enzymes for the survival of the pathogen. Here, we report the crystal structure of OASS isoform 3 from E. histolytica to 1.54 Å resolution. The active site geometries and kinetics of EhOASS3 and EhOASS1 structures were found to be very similar. Small-molecule libraries were screened against EhOASS3 and compounds were shortlisted based on the docking scores. F3226-1387 showed best inhibition with IC50 of 38 μM against EhOASS3 and was able to inhibit the growth of the organism to 72%.

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