6KQU image
Deposition Date 2019-08-18
Release Date 2020-08-19
Last Version Date 2024-10-30
Entry Detail
PDB ID:
6KQU
Keywords:
Title:
Crystal structure of phospholipase A2
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 21 2 2
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Group IIE secretory phospholipase A2
Gene (Uniprot):PLA2G2E
Mutagens:N21G
Chain IDs:A
Chain Length:123
Number of Molecules:1
Biological Source:Homo sapiens
Primary Citation
Residue Asn21 acts as a switch for calcium binding to modulate the enzymatic activity of human phospholipase A2 group IIE.
Biochimie 176 117 121 (2020)
PMID: 32659444 DOI: 10.1016/j.biochi.2020.07.003

Abstact

Secreted phospholipases A2 (sPLA2) group IIE (GIIE) is involved in several biological events, such as lipid metabolism and possibly inflammation that may mainly depend on its catalytic reaction. We previously showed that Asn21 is a critical residue that contributes to the enzymatic activity of hGIIE, but the underlying mechanism is still not clear. Here, combined with crystal structures and mutagenesis studies of the Asn21Gly mutant, we demonstrate that Asn21 acts as a switch responsible for the calcium binding and the catalytic efficiency. Our results of the atypical feature of calcium binding in hGIIE not only provide clues to understand the molecular basis of its enzymatic activity and physiological function, but also confer improved specificity for potential inhibitor design of sPLA2.

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