6KO5 image
Deposition Date 2019-08-08
Release Date 2020-08-12
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6KO5
Title:
Complex structure of Ghrelin receptor with Fab
Biological Source:
Source Organism:
Escherichia coli (Taxon ID: 562)
Homo sapiens (Taxon ID: 9606)
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
C 1 2 1
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Chimera of Soluble cytochrome b562 and Growth hormone secretagogue receptor type 1
Gene (Uniprot):cybC, GHSR
Chain IDs:A
Chain Length:424
Number of Molecules:1
Biological Source:Escherichia coli, Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Fab7881 Heavy Chain
Chain IDs:B (auth: H)
Chain Length:218
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Molecule:Fab7881 Light Chain
Chain IDs:C (auth: L)
Chain Length:219
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structure of an antagonist-bound ghrelin receptor reveals possible ghrelin recognition mode.
Nat Commun 11 4160 4160 (2020)
PMID: 32814772 DOI: 10.1038/s41467-020-17554-1

Abstact

Ghrelin is a gastric peptide hormone with important physiological functions. The unique feature of ghrelin is its Serine 3 acyl-modification, which is essential for ghrelin's activity. However, it remains to be elucidated why the acyl-modification of ghrelin is necessary for activity. To address these questions, we solved the crystal structure of the ghrelin receptor bound to antagonist. The ligand-binding pocket of the ghrelin receptor is bifurcated by a salt bridge between E124 and R283. A striking feature of the ligand-binding pocket of the ghrelin receptor is a wide gap (crevasse) between the TM6 and TM7 bundles that is rich in hydrophobic amino acids, including a cluster of phenylalanine residues. Mutagenesis analyses suggest that the interaction between the gap structure and the acyl acid moiety of ghrelin may participate in transforming the ghrelin receptor into an active conformation.

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Primary Citation of related structures