6KNY image
Deposition Date 2019-08-07
Release Date 2020-04-15
Last Version Date 2024-05-29
Entry Detail
PDB ID:
6KNY
Title:
Structure of Amuc_1100 without transmembrane region from Akkermansia muciniphila
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.10 Å
R-Value Free:
0.20
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Protein Amuc_1100
Gene (Uniprot):Amuc_1100
Chain IDs:A, B
Chain Length:287
Number of Molecules:2
Biological Source:Akkermansia muciniphila (strain ATCC BAA-835 / Muc)
Primary Citation
Crystal structure of monomeric Amuc_1100 from Akkermansia muciniphila.
Acta Crystallogr.,Sect.F 76 168 174 (2020)
PMID: 32254050 DOI: 10.1107/S2053230X20004124

Abstact

Many human diseases, such as obesity and diabetes, show annual increases in prevalence and often involve intestinal microbes. One such probiotic bacterium, Akkermansia muciniphila, which was discovered a decade ago, has been reported to influence glucose homeostasis and to contribute to gut health. Amuc_1100, a functionally uncharacterized protein of A. muciniphila, was found to be a key active component in reducing the body weight of mice. Here, the crystal structure of Amuc_1100 (residues 31-317), referred to as Amuc_1100*, is reported at 2.1 Å resolution. Amuc_1100* has a similar fold to three proteins related to pilus formation, PilO, PilN and EpsL, indicating a similar function. Biochemical investigations further confirmed a monomeric state for the soluble region of Amuc_1100, which differs from the dimeric states of PilO, PilN and EpsL. This study provides a structural basis for the elucidation of the molecular mechanism of Amuc_1100.

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Primary Citation of related structures