6KMX image
Deposition Date 2019-08-01
Release Date 2020-01-15
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6KMX
Title:
Structure of PSI from H. hongdechloris grown under far-red light condition
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.41 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA_1
Chain IDs:A (auth: aA), J (auth: bA), S (auth: cA)
Chain Length:784
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB_1
Chain IDs:B (auth: aB), K (auth: bB), T (auth: cB)
Chain Length:743
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C (auth: aC), L (auth: bC), U (auth: cC)
Chain Length:81
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:D (auth: aD), M (auth: bD), V (auth: cD)
Chain Length:142
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:E (auth: aE), N (auth: bE), W (auth: cE)
Chain Length:68
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI_2
Chain IDs:F (auth: aI), O (auth: bI), X (auth: cI)
Chain Length:63
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK
Gene (Uniprot):psaK
Chain IDs:G (auth: aK), P (auth: bK), Y (auth: cK)
Chain Length:96
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL_1
Chain IDs:H (auth: aL), Q (auth: bL), Z (auth: cL)
Chain Length:189
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Chain IDs:I (auth: aM), R (auth: bM), AA (auth: cM)
Chain Length:31
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Primary Citation
Structural basis for the adaptation and function of chlorophyll f in photosystem I.
Nat Commun 11 238 238 (2020)
PMID: 31932639 DOI: 10.1038/s41467-019-13898-5

Abstact

Chlorophylls (Chl) play pivotal roles in energy capture, transfer and charge separation in photosynthesis. Among Chls functioning in oxygenic photosynthesis, Chl f is the most red-shifted type first found in a cyanobacterium Halomicronema hongdechloris. The location and function of Chl f in photosystems are not clear. Here we analyzed the high-resolution structures of photosystem I (PSI) core from H. hongdechloris grown under white or far-red light by cryo-electron microscopy. The structure showed that, far-red PSI binds 83 Chl a and 7 Chl f, and Chl f are associated at the periphery of PSI but not in the electron transfer chain. The appearance of Chl f is well correlated with the expression of PSI genes induced under far-red light. These results indicate that Chl f functions to harvest the far-red light and enhance uphill energy transfer, and changes in the gene sequences are essential for the binding of Chl f.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback