6KMX image
Deposition Date 2019-08-01
Release Date 2020-01-15
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6KMX
Title:
Structure of PSI from H. hongdechloris grown under far-red light condition
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.41 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A1
Gene (Uniprot):psaA_1
Chain IDs:A (auth: aA), J (auth: bA), S (auth: cA)
Chain Length:784
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I P700 chlorophyll a apoprotein A2
Gene (Uniprot):psaB_1
Chain IDs:B (auth: aB), K (auth: bB), T (auth: cB)
Chain Length:743
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I iron-sulfur center
Gene (Uniprot):psaC
Chain IDs:C (auth: aC), L (auth: bC), U (auth: cC)
Chain Length:81
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit II
Gene (Uniprot):psaD
Chain IDs:D (auth: aD), M (auth: bD), V (auth: cD)
Chain Length:142
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit IV
Gene (Uniprot):psaE
Chain IDs:E (auth: aE), N (auth: bE), W (auth: cE)
Chain Length:68
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit VIII
Gene (Uniprot):psaI_2
Chain IDs:F (auth: aI), O (auth: bI), X (auth: cI)
Chain Length:63
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit PsaK
Gene (Uniprot):psaK
Chain IDs:G (auth: aK), P (auth: bK), Y (auth: cK)
Chain Length:96
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XI
Gene (Uniprot):psaL_1
Chain IDs:H (auth: aL), Q (auth: bL), Z (auth: cL)
Chain Length:189
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Polymer Type:polypeptide(L)
Molecule:Photosystem I reaction center subunit XII
Chain IDs:I (auth: aM), R (auth: bM), AA (auth: cM)
Chain Length:31
Number of Molecules:3
Biological Source:Halomicronema hongdechloris C2206
Primary Citation
Structural basis for the adaptation and function of chlorophyll f in photosystem I.
Nat Commun 11 238 238 (2020)
PMID: 31932639 DOI: 10.1038/s41467-019-13898-5

Abstact

Chlorophylls (Chl) play pivotal roles in energy capture, transfer and charge separation in photosynthesis. Among Chls functioning in oxygenic photosynthesis, Chl f is the most red-shifted type first found in a cyanobacterium Halomicronema hongdechloris. The location and function of Chl f in photosystems are not clear. Here we analyzed the high-resolution structures of photosystem I (PSI) core from H. hongdechloris grown under white or far-red light by cryo-electron microscopy. The structure showed that, far-red PSI binds 83 Chl a and 7 Chl f, and Chl f are associated at the periphery of PSI but not in the electron transfer chain. The appearance of Chl f is well correlated with the expression of PSI genes induced under far-red light. These results indicate that Chl f functions to harvest the far-red light and enhance uphill energy transfer, and changes in the gene sequences are essential for the binding of Chl f.

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Primary Citation of related structures