6KMV image
Deposition Date 2019-08-01
Release Date 2020-03-11
Last Version Date 2025-03-12
Entry Detail
PDB ID:
6KMV
Keywords:
Title:
caspase-11 C254A P22/P10 in complex with mouse GSDMD-C domain
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Mutagens:C254A
Chain IDs:A
Chain Length:161
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Mutagens:C254A
Chain IDs:B, V
Chain Length:167
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gasdermin-D
Gene (Uniprot):Gsdmd
Chain IDs:C, G, O
Chain Length:150
Number of Molecules:3
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gasdermin-D
Gene (Uniprot):Gsdmd
Chain IDs:D, K, S, T, W, BA (auth: b), FA (auth: f)
Chain Length:167
Number of Molecules:7
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Mutagens:C254A
Chain IDs:E, F, Z, DA (auth: d)
Chain Length:166
Number of Molecules:4
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gasdermin-D
Gene (Uniprot):Gsdmd
Chain IDs:H
Chain Length:191
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Mutagens:C254A
Chain IDs:I, M, N, Q, Y
Chain Length:165
Number of Molecules:5
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Mutagens:C254A
Chain IDs:J
Chain Length:88
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gasdermin-D
Gene (Uniprot):Gsdmd
Chain IDs:L, P, EA (auth: e)
Chain Length:166
Number of Molecules:3
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Mutagens:C254A
Chain IDs:R, CA (auth: c)
Chain Length:150
Number of Molecules:2
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Mutagens:C254A
Chain IDs:U
Chain Length:165
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gasdermin-D
Gene (Uniprot):Gsdmd
Chain IDs:X
Chain Length:199
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Gasdermin-D
Gene (Uniprot):Gsdmd
Chain IDs:AA (auth: a)
Chain Length:161
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Chain IDs:GA (auth: g), HA (auth: h), IA (auth: i), JA (auth: j), KA (auth: k), LA (auth: l), MA (auth: m), NA (auth: n), OA (auth: o), PA (auth: p), QA (auth: q), RA (auth: r), TA (auth: t), UA (auth: u), VA (auth: v)
Chain Length:198
Number of Molecules:15
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Caspase-4
Gene (Uniprot):Casp4
Chain IDs:SA (auth: s)
Chain Length:87
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell 180 941 ? (2020)
PMID: 32109412 DOI: 10.1016/j.cell.2020.02.002

Abstact

The pyroptosis execution protein GSDMD is cleaved by inflammasome-activated caspase-1 and LPS-activated caspase-11/4/5. The cleavage unmasks the pore-forming domain from GSDMD-C-terminal domain. How the caspases recognize GSDMD and its connection with caspase activation are unknown. Here, we show site-specific caspase-4/11 autoprocessing, generating a p10 product, is required and sufficient for cleaving GSDMD and inducing pyroptosis. The p10-form autoprocessed caspase-4/11 binds the GSDMD-C domain with a high affinity. Structural comparison of autoprocessed and unprocessed capase-11 identifies a β sheet induced by the autoprocessing. In caspase-4/11-GSDMD-C complex crystal structures, the β sheet organizes a hydrophobic GSDMD-binding interface that is only possible for p10-form caspase-4/11. The binding promotes dimerization-mediated caspase activation, rendering a cleavage independently of the cleavage-site tetrapeptide sequence. Crystal structure of caspase-1-GSDMD-C complex shows a similar GSDMD-recognition mode. Our study reveals an unprecedented substrate-targeting mechanism for caspases. The hydrophobic interface suggests an additional space for developing inhibitors specific for pyroptotic caspases.

Legend

Protein

Chemical

Disease

Primary Citation of related structures
Feedback Form
Name
Email
Institute
Feedback