6KMV image
Entry Detail
PDB ID:
6KMV
Keywords:
Title:
caspase-11 C254A P22/P10 in complex with mouse GSDMD-C domain
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-08-01
Release Date:
2020-03-11
Method Details:
Experimental Method:
Resolution:
3.35 Å
R-Value Free:
0.25
R-Value Work:
0.21
R-Value Observed:
0.21
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Caspase-4
Mutations:C254A
Chain IDs:A
Chain Length:161
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Mutations:C254A
Chain IDs:B, V
Chain Length:167
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Gasdermin-D
Chain IDs:C, G, O
Chain Length:150
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Gasdermin-D
Chain IDs:D, K, S, T, W, BA (auth: b), FA (auth: f)
Chain Length:167
Number of Molecules:7
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Mutations:C254A
Chain IDs:E, F, Z, DA (auth: d)
Chain Length:166
Number of Molecules:4
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Gasdermin-D
Chain IDs:H
Chain Length:191
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Mutations:C254A
Chain IDs:I, M, N, Q, Y
Chain Length:165
Number of Molecules:5
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Mutations:C254A
Chain IDs:J
Chain Length:88
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Gasdermin-D
Chain IDs:L, P, EA (auth: e)
Chain Length:166
Number of Molecules:3
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Mutations:C254A
Chain IDs:R, CA (auth: c)
Chain Length:150
Number of Molecules:2
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Mutations:C254A
Chain IDs:U
Chain Length:165
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Gasdermin-D
Chain IDs:X
Chain Length:199
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Gasdermin-D
Chain IDs:AA (auth: a)
Chain Length:161
Number of Molecules:1
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Chain IDs:GA (auth: g), HA (auth: h), IA (auth: i), JA (auth: j), KA (auth: k), LA (auth: l), MA (auth: m), NA (auth: n), OA (auth: o), PA (auth: p), QA (auth: q), RA (auth: r), TA (auth: t), UA (auth: u), VA (auth: v)
Chain Length:198
Number of Molecules:15
Biological Source:Mus musculus
Polymer Type:polypeptide(L)
Description:Caspase-4
Chain IDs:SA (auth: s)
Chain Length:87
Number of Molecules:1
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Structural Mechanism for GSDMD Targeting by Autoprocessed Caspases in Pyroptosis.
Cell 180 941 ? (2020)
PMID: 32109412 DOI: 10.1016/j.cell.2020.02.002

Abstact

The pyroptosis execution protein GSDMD is cleaved by inflammasome-activated caspase-1 and LPS-activated caspase-11/4/5. The cleavage unmasks the pore-forming domain from GSDMD-C-terminal domain. How the caspases recognize GSDMD and its connection with caspase activation are unknown. Here, we show site-specific caspase-4/11 autoprocessing, generating a p10 product, is required and sufficient for cleaving GSDMD and inducing pyroptosis. The p10-form autoprocessed caspase-4/11 binds the GSDMD-C domain with a high affinity. Structural comparison of autoprocessed and unprocessed capase-11 identifies a β sheet induced by the autoprocessing. In caspase-4/11-GSDMD-C complex crystal structures, the β sheet organizes a hydrophobic GSDMD-binding interface that is only possible for p10-form caspase-4/11. The binding promotes dimerization-mediated caspase activation, rendering a cleavage independently of the cleavage-site tetrapeptide sequence. Crystal structure of caspase-1-GSDMD-C complex shows a similar GSDMD-recognition mode. Our study reveals an unprecedented substrate-targeting mechanism for caspases. The hydrophobic interface suggests an additional space for developing inhibitors specific for pyroptotic caspases.

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Disease

Primary Citation of related structures