6KM8 image
Entry Detail
PDB ID:
6KM8
Keywords:
Title:
Crystal Structure of Momordica charantia 7S globulin
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-07-31
Release Date:
2020-02-12
Method Details:
Experimental Method:
Resolution:
3.10 Å
R-Value Free:
0.27
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
P 63
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:7S globulin
Chain IDs:A
Chain Length:381
Number of Molecules:1
Biological Source:Momordica charantia
Primary Citation
Structural characterization and in-silico analysis of Momordica charantia 7S globulin for stability and ACE inhibition.
Sci Rep 10 1160 1160 (2020)
PMID: 31980708 DOI: 10.1038/s41598-020-58138-9

Abstact

Momordica charantia (Mc) seeds are widely used edible crop with high nutritional quality. The food and pharmaceutical industries use it as a natural anti-oxygenic agent. Herein, a ~52 kDa protein, which is a major part of seed proteome has been purified, biochemically characterized and structure has been determined. MALDI-ESI-MS identified peptide fragments and contig-deduced sequence suggested the protein to be homologous to 7S globulins. The crystal structure shows that protein has a bicupin fold similar to 7S globulins and the electron density for a copper and acetate ligand were observed in the C-terminal barrel domain. In silico study reveals that a tripeptide (VFK) from Mc7S possess a higher binding affinity for angiotensin converting enzyme (ACE) than already reported drug Lisinopril (LPR). The protein is a glycoprotein and highly stable under varying thermal and pH conditions due to its secondary structures. The DPPH (2,2-diphenyl-1-picryl-hydrazyl-hydrate) assay showed the protein to have an anti-oxygenic nature and can aid in scavenging free radical from sample. The protein can assist to enhance the nutritional and functional value of food by acting as a food antioxidant. Further, characterization of Mc7S required which might add in importance of Mc7S as antioxidant, anti-diabetic and anti-hypertensive.

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