6KKM image
Deposition Date 2019-07-26
Release Date 2020-05-13
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6KKM
Title:
Crystal structure of RbcL-Raf1 complex from Anabaena sp. PCC 7120
Biological Source:
Method Details:
Experimental Method:
Resolution:
3.00 Å
R-Value Free:
0.27
R-Value Work:
0.22
R-Value Observed:
0.23
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Ribulose bisphosphate carboxylase large chain
Gene (Uniprot):cbbL
Chain IDs:E (auth: A), F (auth: B), G (auth: C), H (auth: D)
Chain Length:491
Number of Molecules:4
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Polymer Type:polypeptide(L)
Molecule:All5250 protein
Gene (Uniprot):raf1
Chain IDs:A (auth: E), B (auth: F), C (auth: G), D (auth: H)
Chain Length:361
Number of Molecules:4
Biological Source:Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576)
Ligand Molecules
Primary Citation
Molecular basis for the assembly of RuBisCO assisted by the chaperone Raf1.
Nat.Plants 6 708 717 (2020)
PMID: 32451445 DOI: 10.1038/s41477-020-0665-8

Abstact

The folding and assembly of RuBisCO, the most abundant enzyme in nature, needs a series of chaperones, including the RuBisCO accumulation factor Raf1, which is highly conserved in cyanobacteria and plants. Here, we report the crystal structures of Raf1 from cyanobacteria Anabaena sp. PCC 7120 and its complex with RuBisCO large subunit RbcL. Structural analyses and biochemical assays reveal that each Raf1 dimer captures an RbcL dimer, with the C-terminal tail inserting into the catalytic pocket, and further mediates the assembly of RbcL dimers to form the octameric core of RuBisCO. Furthermore, the cryo-electron microscopy structures of the RbcL-Raf1-RbcS assembly intermediates enable us to see a dynamic assembly process from RbcL8Raf18 to the holoenzyme RbcL8RbcS8. In vitro assays also indicate that Raf1 can attenuate and reverse CcmM-mediated cyanobacterial RuBisCO condensation. Combined with previous findings, we propose a putative model for the assembly of cyanobacterial RuBisCO coordinated by the chaperone Raf1.

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Primary Citation of related structures