6KJV image
Deposition Date 2019-07-23
Release Date 2019-11-13
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6KJV
Title:
Structure of thermal-stabilised(M9) human GLP-1 receptor transmembrane domain
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.80 Å
R-Value Free:
0.28
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Glucagon-like peptide 1 receptor,Endolysin,Glucagon-like peptide 1 receptor
Gene (Uniprot):E, GLP1R
Mutations:S193C,I196F,S225A,S271A,I317C,G318I,K346A,C347F,G361C,205-214deletion,R1011G,C1053T,C1096A,I1136R
Chain IDs:A, B
Chain Length:455
Number of Molecules:2
Biological Source:Homo sapiens, Enterobacteria phage T4
Primary Citation
Mutagenesis facilitated crystallization of GLP-1R.
Iucrj 6 996 1006 (2019)
PMID: 31709055 DOI: 10.1107/S2052252519013496

Abstact

The class B family of G-protein-coupled receptors (GPCRs) has long been a paradigm for peptide hormone recognition and signal transduction. One class B GPCR, the glucagon-like peptide-1 receptor (GLP-1R), has been considered as an anti-diabetes drug target and there are several peptidic drugs available for the treatment of this overwhelming disease. The previously determined structures of inactive GLP-1R in complex with two negative allosteric modulators include ten thermal-stabilizing mutations that were selected from a total of 98 designed mutations. Here we systematically summarize all 98 mutations we have tested and the results suggest that the mutagenesis strategy that strengthens inter-helical hydro-phobic interactions shows the highest success rate. We further investigate four back mutations by thermal-shift assay, crystallization and molecular dynamic simulations, and conclude that mutation I1962.66bF increases thermal stability intrinsically and that mutation S2714.47bA decreases crystal packing entropy extrinsically, while mutations S1932.63bC and M2333.36bC may be dispensable since these two cysteines are not di-sulfide-linked. Our results indicate intrinsic connections between different regions of GPCR transmembrane helices and the current data suggest a general mutagenesis principle for structural determination of GPCRs and other membrane proteins.

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Primary Citation of related structures