6KJN image
Deposition Date 2019-07-22
Release Date 2020-03-18
Last Version Date 2024-10-16
Entry Detail
PDB ID:
6KJN
Keywords:
Title:
The microtubule-binding domains of yeast cytoplasmic dynein in the high affinity state
Biological Source:
Method Details:
Experimental Method:
Conformers Calculated:
200
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Dynein heavy chain, cytoplasmic
Gene (Uniprot):DYN1
Mutations:I3101C, V3222C
Chain IDs:A
Chain Length:141
Number of Molecules:1
Biological Source:Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Primary Citation
Structural basis for two-way communication between dynein and microtubules.
Nat Commun 11 1038 1038 (2020)
PMID: 32098965 DOI: 10.1038/s41467-020-14842-8

Abstact

The movements of cytoplasmic dynein on microtubule (MT) tracks is achieved by two-way communication between the microtubule-binding domain (MTBD) and the ATPase domain via a coiled-coil stalk, but the structural basis of this communication remains elusive. Here, we regulate MTBD either in high-affinity or low-affinity states by introducing a disulfide bond to the stalk and analyze the resulting structures by NMR and cryo-EM. In the MT-unbound state, the affinity changes of MTBD are achieved by sliding of the stalk α-helix by a half-turn, which suggests that structural changes propagate from the ATPase-domain to MTBD. In addition, MT binding induces further sliding of the stalk α-helix even without the disulfide bond, suggesting how the MT-induced conformational changes propagate toward the ATPase domain. Based on differences in the MT-binding surface between the high- and low-affinity states, we propose a potential mechanism for the directional bias of dynein movement on MT tracks.

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Primary Citation of related structures