6KJ0 image
Entry Detail
PDB ID:
6KJ0
Keywords:
Title:
Bifunctional xylosidase/glucosidase LXYL mutant E529Q C2221
Biological Source:
Source Organism:
Host Organism:
PDB Version:
Deposition Date:
2019-07-20
Release Date:
2020-02-26
Method Details:
Experimental Method:
Resolution:
2.27 Å
R-Value Free:
0.25
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 2 2 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Beta-D-xylosidase/beta-D-glucosidase
Mutations:E529Q
Chain IDs:A, B
Chain Length:809
Number of Molecules:2
Biological Source:Lentinula edodes
Primary Citation
Structures of beta-glycosidase LXYL-P1-2 reveals the product binding state of GH3 family and a specific pocket for Taxol recognition.
Commun Biol 3 22 22 (2020)
PMID: 31925310 DOI: 10.1038/s42003-019-0744-4

Abstact

LXYL-P1-2 is one of the few xylosidases that efficiently catalyze the reaction from 7-β-xylosyl-10-deacetyltaxol (XDT) to 10-deacetyltaxol (DT), and is a potential enzyme used in Taxol industrial production. Here we report the crystal structure of LXYL-P1-2 and its XDT binding complex. These structures reveal an enzyme/product complex with the sugar conformation different from the enzyme/substrate complex reported previously in GH3 enzymes, even in the whole glycohydrolases family. In addition, the DT binding pocket is identified as the structural basis for the substrate specificity. Further structure analysis reveals common features in LXYL-P1-2 and Taxol binding protein tubulin, which might provide useful information for designing new Taxol carrier proteins for drug delivery.

Legend

Protein

Chemical

Disease

Primary Citation of related structures