6KHX image
Deposition Date 2019-07-16
Release Date 2020-02-19
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6KHX
Keywords:
Title:
Crystal structure of Prx from Akkermansia muciniphila
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.58 Å
R-Value Free:
0.21
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 21 21 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peroxiredoxin
Chain IDs:A, B, C, D, E, F, G, H, I, J
Chain Length:215
Number of Molecules:10
Biological Source:Akkermansia muciniphila
Ligand Molecules
Primary Citation
Crystal structure of Akkermansia muciniphila peroxiredoxin reveals a novel regulatory mechanism of typical 2-Cys Prxs by a distinct loop.
Febs Lett. 594 1550 1563 (2020)
PMID: 32027024 DOI: 10.1002/1873-3468.13753

Abstact

Peroxiredoxins (Prxs) are thiol-specific antioxidant proteins commonly found in organisms that protect cells from the damage of reactive oxygen species produced by metabolism and that participate in cell signaling. The Prx from the bacterium Akkermansia muciniphila (AmPrx) is a typical 2-Cys Prx characterized by two conserved cysteines: Cys49 and Cys183. Here, we verified the peroxidase activity of AmPrx and determined its crystal structure in reduced form, which is a doughnut-shaped decamer composed of five dimers. Particularly, a distinct loop between the α4 helix and β6 strand is involved in the decameric interaction. Deletion of this loop destroys the decameric structure and significantly decreases the peroxidase activity of AmPrx. Our findings reveal a novel regulatory mechanism of typical 2-Cys Prx, in which the α4-β6 loop affects the assembly of Prx and, therefore, regulates its peroxidase activity.

Legend

Protein

Chemical

Disease

Primary Citation of related structures