6KFW image
Deposition Date 2019-07-09
Release Date 2020-07-15
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6KFW
Keywords:
Title:
The cytochrome P450 enzyme CxnD for C-S bond formation in chuangxinmycin biosynthesis
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.00 Å
R-Value Free:
0.23
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 21 21 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:CxnD
Chain IDs:A
Chain Length:410
Number of Molecules:1
Biological Source:Actinoplanes tsinanensis
Primary Citation
The Cytochrome P450 Catalyzing C-S Bond Formation in S-Heterocyclization of Chuangxinmycin Biosynthesis.
Angew.Chem.Int.Ed.Engl. 60 15399 15404 (2021)
PMID: 33884733 DOI: 10.1002/anie.202015814

Abstact

Microbial sulfur-containing secondary metabolites show various biological activities, but the C-S bond-forming in their biosynthetic metabolism has not been thoroughly understood. Here, we present genetic, biochemical and structural characterization of a cytochrome P450 monooxygenase CxnD exhibiting C-S bond forming activity in S-heterocyclization of chuangxinmycin biosynthesis. In vivo and in vitro analyses demonstrated that CxnD generated an indole-fused dihydrothiopyran skeleton from a L-Trp-derived thiol intermediate. Furthermore, X-ray crystal structure of CxnD in complex with a substrate analogue and structure-based mutagenesis revealed intimate details of the substrate binding mode. A radical mechanism initiated by abstraction of the imino hydrogen atom or an electron from indole group of the substrate was proposed for CxnD, which provided valuable insights into the molecular basis for the intra-molecular C(sp2)-H thiolation by the P450 in chuangxinmycin biosynthesis.

Legend

Protein

Chemical

Disease

Primary Citation of related structures