6KA2 image
Entry Detail
PDB ID:
6KA2
Title:
Crystal structure of a Thebaine synthase from Papaver somniferum in complex with TBN
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-06-20
Release Date:
2020-06-24
Method Details:
Experimental Method:
Resolution:
2.35 Å
R-Value Free:
0.24
R-Value Work:
0.19
R-Value Observed:
0.19
Space Group:
C 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Thebaine synthase 2
Chain IDs:A, B, C, D
Chain Length:160
Number of Molecules:4
Biological Source:Papaver somniferum
Ligand Molecules
Primary Citation
Structural insights into thebaine synthase 2 catalysis.
Biochem.Biophys.Res.Commun. 529 156 161 (2020)
PMID: 32703404 DOI: 10.1016/j.bbrc.2020.05.199

Abstact

Thebaine synthase 2 (THS2) that can transform (7S)-salutaridinol 7-O-acetate to thebaine catalyzes the final step of thebaine biosynthesis in Papaver somniferum. Here, the crystal structures of THS2 and its complex with thebaine are reported, revealing the interaction network in the substrate-binding pocket. Subsequent docking and QM/MM studies was performed to further explore the catalytic mechanism of THS2. Our results suggest that T105 may abstract the proton of C4-OH from the substrate under the assistance of H89. The resulting C4-O- phenolate anion then attacks the nearby C5, and triggers intramolecular SN2' syn displacement with the elimination of O-acetyl group. Moreover, the latter SN2' reaction is the rate-determining step of the whole enzymatic reaction with an overall energy barrier of 18.8 kcal/mol. These findings are of pivotal importance to understand the mechanism of action of thebaine biosynthesis, and would guide enzyme engineering to enhance the production of opiate alkaloids via metabolic engineering.

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