6K4L image
Entry Detail
PDB ID:
6K4L
Title:
Crystal structure of Se-labelled SidJ complex with CaM at 2.95 A
Biological Source:
PDB Version:
Deposition Date:
2019-05-24
Release Date:
2019-07-24
Method Details:
Experimental Method:
Resolution:
2.95 Å
R-Value Free:
0.26
R-Value Work:
0.24
R-Value Observed:
0.24
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:SidJ
Chain IDs:A, B
Chain Length:873
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Polymer Type:polypeptide(L)
Description:Calmodulin-1
Chain IDs:C, D
Chain Length:149
Number of Molecules:2
Biological Source:Homo sapiens
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
MSE A MET modified residue
Primary Citation
Regulation of phosphoribosyl ubiquitination by a calmodulin-dependent glutamylase.
Nature 572 387 391 (2019)
PMID: 31330531 DOI: 10.1038/s41586-019-1439-1

Abstact

The bacterial pathogen Legionella pneumophila creates an intracellular niche permissive for its replication by extensively modulating host-cell functions using hundreds of effector proteins delivered by its Dot/Icm secretion system1. Among these, members of the SidE family (SidEs) regulate several cellular processes through a unique phosphoribosyl ubiquitination mechanism that bypasses the canonical ubiquitination machinery2-4. The activity of SidEs is regulated by another Dot/Icm effector known as SidJ5; however, the mechanism of this regulation is not completely understood6,7. Here we demonstrate that SidJ inhibits the activity of SidEs by inducing the covalent attachment of glutamate moieties to SdeA-a member of the SidE family-at E860, one of the catalytic residues that is required for the mono-ADP-ribosyltransferase activity involved in ubiquitin activation2. This inhibition by SidJ is spatially restricted in host cells because its activity requires the eukaryote-specific protein calmodulin (CaM). We solved a structure of SidJ-CaM in complex with AMP and found that the ATP used in this reaction is cleaved at the α-phosphate position by SidJ, which-in the absence of glutamate or modifiable SdeA-undergoes self-AMPylation. Our results reveal a mechanism of regulation in bacterial pathogenicity in which a glutamylation reaction that inhibits the activity of virulence factors is activated by host-factor-dependent acyl-adenylation.

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Primary Citation of related structures