6K42 image
Deposition Date 2019-05-23
Release Date 2020-04-15
Last Version Date 2025-06-25
Entry Detail
PDB ID:
6K42
Title:
cryo-EM structure of alpha2BAR-Gi1 complex
Biological Source:
Source Organism:
Bos taurus (Taxon ID: 9913)
Mus musculus (Taxon ID: 10090)
Homo sapiens (Taxon ID: 9606)
Enterobacteria phage RB59 (Taxon ID: 697290)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.10 Å
Aggregation State:
3D ARRAY
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(i) subunit alpha-1
Gene (Uniprot):GNAI1
Chain IDs:A
Chain Length:354
Number of Molecules:1
Biological Source:Bos taurus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1
Gene (Uniprot):Gnb1
Chain IDs:B
Chain Length:350
Number of Molecules:1
Biological Source:Mus musculus
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-2
Gene (Uniprot):GNG2
Chain IDs:C (auth: G)
Chain Length:71
Number of Molecules:1
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:scFv
Chain IDs:E (auth: H)
Chain Length:307
Number of Molecules:1
Biological Source:Mus musculus
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Alpha-2A adrenergic receptor,Endolysin,Alpha-2B adrenergic receptor,Alpha-2B adrenergic receptor
Gene (Uniprot):ADRA2A, ADRA2B
Chain IDs:D (auth: R)
Chain Length:512
Number of Molecules:1
Biological Source:Homo sapiens, Enterobacteria phage RB59
Ligand Molecules
Primary Citation
Activation of the alpha2Badrenoceptor by the sedative sympatholytic dexmedetomidine.
Nat.Chem.Biol. 16 507 512 (2020)
PMID: 32152538 DOI: 10.1038/s41589-020-0492-2

Abstact

The α2 adrenergic receptors (α2ARs) are G protein-coupled receptors (GPCRs) that respond to adrenaline and noradrenaline and couple to the Gi/o family of G proteins. α2ARs play important roles in regulating the sympathetic nervous system. Dexmedetomidine is a highly selective α2AR agonist used in post-operative patients as an anxiety-reducing, sedative medicine that decreases the requirement for opioids. As is typical for selective αAR agonists, dexmedetomidine consists of an imidazole ring and a substituted benzene moiety lacking polar groups, which is in contrast to βAR-selective agonists, which share an ethanolamine group and an aromatic system with polar, hydrogen-bonding substituents. To better understand the structural basis for the selectivity and efficacy of adrenergic agonists, we determined the structure of the α2BAR in complex with dexmedetomidine and Go at a resolution of 2.9 Å by single-particle cryo-EM. The structure reveals the mechanism of α2AR-selective activation and provides insights into Gi/o coupling specificity.

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Protein

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Disease

Primary Citation of related structures
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