6JZU image
Deposition Date 2019-05-03
Release Date 2020-04-01
Last Version Date 2024-10-09
Entry Detail
PDB ID:
6JZU
Title:
The crystal structure of acyl-acyl carrier protein (acyl-ACP) reductase (AAR) in complex with aldehyde deformylating oxygenase (ADO)
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.18 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Long-chain acyl-[acyl-carrier-protein] reductase
Gene (Uniprot):SEC0028
Chain IDs:A
Chain Length:341
Number of Molecules:1
Biological Source:Synechococcus elongatus PCC 7942
Polymer Type:polypeptide(L)
Molecule:Aldehyde decarbonylase
Gene (Uniprot):SEC0027
Chain IDs:B
Chain Length:254
Number of Molecules:1
Biological Source:Synechococcus elongatus PCC 7942
Primary Citation
Structural insights into catalytic mechanism and product delivery of cyanobacterial acyl-acyl carrier protein reductase.
Nat Commun 11 1525 1525 (2020)
PMID: 32251275 DOI: 10.1038/s41467-020-15268-y

Abstact

Long-chain alk(a/e)nes represent the major constituents of conventional transportation fuels. Biosynthesis of alkanes is ubiquitous in many kinds of organisms. Cyanobacteria possess two enzymes, acyl-acyl carrier protein (acyl-ACP) reductase (AAR) and aldehyde-deformylating oxygenase (ADO), which function in a two-step alkane biosynthesis pathway. These two enzymes act in series and possibly form a complex that efficiently converts long chain fatty acyl-ACP/fatty acyl-CoA into hydrocarbon. While the structure of ADO has been previously described, structures of both AAR and AAR-ADO complex have not been solved, preventing deeper understanding of this pathway. Here, we report a ligand-free AAR structure, and three AAR-ADO complex structures in which AARs bind various ligands. Our results reveal the binding pattern of AAR with its substrate/cofactor, and suggest a potential aldehyde-transferring channel from AAR to ADO. Based on our structural and biochemical data, we proposed a model for the complete catalytic cycle of AAR.

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