6JVV image
Deposition Date 2019-04-17
Release Date 2019-05-29
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6JVV
Keywords:
Title:
Crystal structure of maleylpyruvate hydrolase from Sphingobium.sp SYK-6
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.51 Å
R-Value Free:
0.17
R-Value Work:
0.15
R-Value Observed:
0.15
Space Group:
P 1 21 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:maleylpyruvate hydrolase
Gene (Uniprot):SLG_11280
Chain IDs:A, B
Chain Length:303
Number of Molecules:2
Biological Source:Sphingobium sp. (strain NBRC 103272 / SYK-6)
Primary Citation
Structural insights into a maleylpyruvate hydrolase from sphingobium sp. SYK-6, a bacterium degrading lignin-derived aryls.
Biochem.Biophys.Res.Commun. 514 765 771 (2019)
PMID: 31079929 DOI: 10.1016/j.bbrc.2019.05.030

Abstact

Sphingobium sp. strain SYK-6, an aerobic gram-negative bacillus found in soil, is known for utilizing lignin-derived monoaryls and biaryls as carbon sources and degrading aromatic compounds. The Sphingobium sp. strain SYK-6 genome contains three genes involved in salicylate catabolism: SLG_11260, SLG_11270, and SLG_11280. Here, we report that the gene product of SLG_11280 functions as a maleylpyruvate hydrolase (SsMPH) with Km and Kcat values of 166.2 μM and 3.76 min-1, respectively. This study also reveals the crystal structures of both the apo and pyruvate-manganese ion-bound SsMPH, which revealed that like other fumarylacetoacetate hydrolases, SsMPH dimerizes and has nine unique 310-helices. Molecular docking studies of maleylpyruvate also revealed the likely binding mode of SsMPH and its substrate.

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