6JQA image
Deposition Date 2019-03-29
Release Date 2019-05-15
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6JQA
Keywords:
Title:
Crystal structure of phyllogen, a phyllody inducing effector protein of phytoplasma.
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.40 Å
R-Value Free:
0.30
R-Value Work:
0.26
R-Value Observed:
0.27
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Phytoplasmal effector causing phyllody 1
Gene (Uniprot):PHYL1
Chain IDs:A
Chain Length:91
Number of Molecules:1
Biological Source:Onion yellows phytoplasma OY-W
Polymer Type:polypeptide(L)
Molecule:Phytoplasmal effector causing phyllody 1
Gene (Uniprot):PHYL1
Chain IDs:B, C
Chain Length:91
Number of Molecules:2
Biological Source:Onion yellows phytoplasma OY-W
Polymer Type:polypeptide(L)
Molecule:Phytoplasmal effector causing phyllody 1
Gene (Uniprot):PHYL1
Chain IDs:D
Chain Length:91
Number of Molecules:1
Biological Source:Onion yellows phytoplasma OY-W
Modified Residue
Compound ID Chain ID Parent Comp ID Details 2D Image
IYR A TYR modified residue
TYI A TYR modified residue
Ligand Molecules
Primary Citation
Crystal structure of phyllogen, a phyllody-inducing effector protein of phytoplasma.
Biochem.Biophys.Res.Commun. 513 952 957 (2019)
PMID: 31010685 DOI: 10.1016/j.bbrc.2019.04.060

Abstact

Phytoplasmas are plant pathogenic bacteria that often induce unique phyllody symptoms in which the floral organs are transformed into leaf-like structures. Recently, a novel family of bacterial effector genes, called phyllody-inducing genes (phyllogens), was identified as being involved in the induction of phyllody by degrading floral MADS-domain transcription factors (MTFs). However, the structural characteristics of phyllogens are unknown. In this study, we elucidated the crystal structure of PHYL1OY, a phyllogen of 'Candidatus Phytoplasma asteris' onion yellows strain, at a resolution of 2.4 Å. The structure of PHYL1 consisted of two α-helices connected by a random loop in a coiled-coil manner. In both α-helices, the distributions of hydrophobic residues were conserved among phyllogens. Amino acid insertion mutations into either α-helix resulted in the loss of phyllody-inducing activity and the ability of the phyllogen to degrade floral MTF. In contrast, the same insertion in the loop region did not affect either activity, indicating that both conserved α-helices are important for the function of phyllogens. This is the first report on the crystal structure of an effector protein of phytoplasmas.

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Primary Citation of related structures