6JQ9 image
Deposition Date 2019-03-29
Release Date 2020-04-01
Last Version Date 2024-05-29
Entry Detail
PDB ID:
6JQ9
Keywords:
Title:
Crystal structure of a lyase from Alteromonas sp.
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
1.81 Å
R-Value Free:
0.28
R-Value Work:
0.23
R-Value Observed:
0.23
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Short ulvan lyase
Gene (Uniprot):LOR_107
Chain IDs:A, B
Chain Length:483
Number of Molecules:2
Biological Source:Alteromonas sp. LOR
Primary Citation
Biochemical characterization and structural analysis of ulvan lyase from marine Alteromonas sp. reveals the basis for its salt tolerance.
Int.J.Biol.Macromol. 147 1309 1317 (2020)
PMID: 31751708 DOI: 10.1016/j.ijbiomac.2019.10.095

Abstact

Marine macroalgae have gained considerable attention as renewable biomass sources. Ulvan is a water-soluble anionic polysaccharide, and its depolymerization into fermentable monosaccharides has great potential for the production of bioethanol or high-value food additives. Ulvan lyase from Alteromonas sp. (AsPL) utilizes a β-elimination mechanism to cleave the glycosidic bond between rhamnose 3-sulfate and glucuronic acid, forming an unsaturated uronic acid at the non-reducing end. AsPL was active in the temperature range of 30-50 °C and pH values ranging from 7.5 to 9.5. Furthermore, AsPL was found to be halophilic, showing high activity and stability in the presence of up to 2.5 M NaCl. The apparent Km and kcat values of AsPL are 3.19 ± 0.37 mg mL-1 and 4.19 ± 0.21 s-1, respectively. Crystal structure analysis revealed that AsPL adopts a β-propeller fold with four anti-parallel β-strands in each of the seven propeller blades. The acid residues at the protein surface and two Ca2+ coordination sites contribute to its salt tolerance. The research on ulvan lyase has potential commercial value in the utilization of algal resources for biofuel production to relieve the environmental burden of petrochemicals.

Legend

Protein

Chemical

Disease

Primary Citation of related structures