6JPW image
Entry Detail
PDB ID:
6JPW
Keywords:
Title:
Crystal structure of Zika NS2B-NS3 protease with compound 1C
Biological Source:
Host Organism:
PDB Version:
Deposition Date:
2019-03-28
Release Date:
2019-06-26
Method Details:
Experimental Method:
Resolution:
1.95 Å
R-Value Free:
0.20
R-Value Work:
0.16
R-Value Observed:
0.17
Space Group:
P 21 21 21
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:Serine protease subunit NS2B
Chain IDs:A, C, E, G
Chain Length:53
Number of Molecules:4
Biological Source:Zika virus
Polymer Type:polypeptide(L)
Description:NS3 protease
Chain IDs:B, D, F, H
Chain Length:178
Number of Molecules:4
Biological Source:Zika virus (strain Mr 766)
Polymer Type:polypeptide(L)
Description:SER-C0F-GLY-LYS-ARG-LYS
Chain IDs:I (auth: J), J (auth: K), K (auth: L)
Chain Length:6
Number of Molecules:3
Biological Source:synthetic construct
Primary Citation
Biocompatible Macrocyclization between Cysteine and 2-Cyanopyridine Generates Stable Peptide Inhibitors.
Org.Lett. 21 4709 4712 (2019)
PMID: 31188009 DOI: 10.1021/acs.orglett.9b01545

Abstact

Peptides featuring an N-terminal cysteine residue and the unnatural amino acid 3-(2-cyano-4-pyridyl)alanine (Cpa) cyclize spontaneously in aqueous solution at neutral pH. Cpa is readily available and easily introduced into peptides using standard solid-phase peptide synthesis. The reaction is orthogonal to all proteinogenic amino acids, including cysteine residues that are not at the N-terminus. A substrate peptide of the Zika virus NS2B-NS3 protease cyclized in this way produced an inhibitor of high affinity and proteolytic stability.

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Primary Citation of related structures