6JMX image
Deposition Date 2019-03-13
Release Date 2020-01-15
Last Version Date 2024-05-29
Entry Detail
PDB ID:
6JMX
Keywords:
Title:
Structure of open form of peptidoglycan peptidase
Biological Source:
Source Organism:
Host Organism:
Method Details:
Experimental Method:
Resolution:
1.86 Å
R-Value Free:
0.19
R-Value Work:
0.17
R-Value Observed:
0.17
Space Group:
P 61
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Peptidase M23
Chain IDs:A
Chain Length:262
Number of Molecules:1
Biological Source:Campylobacter jejuni
Primary Citation
Peptidoglycan reshaping by a noncanonical peptidase for helical cell shape in Campylobacter jejuni.
Nat Commun 11 458 458 (2020)
PMID: 31974386 DOI: 10.1038/s41467-019-13934-4

Abstact

Assembly of the peptidoglycan is crucial in maintaining viability of bacteria and in defining bacterial cell shapes, both of which are important for existence in the ecological niche that the organism occupies. Here, eight crystal structures for a member of the cell-shape-determining class of Campylobacter jejuni, the peptidoglycan peptidase 3 (Pgp3), are reported. Characterization of the turnover chemistry of Pgp3 reveals cell wall D,D-endopeptidase and D,D-carboxypeptidase activities. Catalysis is accompanied by large conformational changes upon peptidoglycan binding, whereby a loop regulates access to the active site. Furthermore, prior hydrolysis of the crosslinked peptide stem from the saccharide backbone of the peptidoglycan on one side is a pre-requisite for its recognition and turnover by Pgp3. These analyses reveal the noncanonical nature of the transformations at the core of the events that define the morphological shape for C. jejuni as an intestinal pathogen.

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Primary Citation of related structures