6JLU image
Entry Detail
PDB ID:
6JLU
EMDB ID:
Keywords:
Title:
Structure of PSII-FCP supercomplex from a centric diatom Chaetoceros gracilis at 3.02 angstrom resolution
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-03-06
Release Date:
2019-07-31
Method Details:
Experimental Method:
Resolution:
3.02 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:FCP-E
Chain IDs:YA (auth: 0), IB (auth: 10)
Chain Length:178
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:FCP-A
Chain IDs:ZA (auth: 1), AB (auth: 2), BB (auth: 3), CB (auth: 4), DB (auth: 5), EB (auth: 6), FB (auth: 7), GB (auth: 8), JB (auth: 11), KB (auth: 12), LB (auth: 13), MB (auth: 14), NB (auth: 15), OB (auth: 16), PB (auth: 17), QB (auth: 18)
Chain Length:172
Number of Molecules:16
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:FCP-F
Chain IDs:HB (auth: 9), RB (auth: 19)
Chain Length:166
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbA
Chain IDs:A, Z (auth: a)
Chain Length:359
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbB
Chain IDs:B, AA (auth: b)
Chain Length:509
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbC
Chain IDs:C, BA (auth: c)
Chain Length:450
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbD
Chain IDs:D, CA (auth: d)
Chain Length:341
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbE
Chain IDs:E, DA (auth: e)
Chain Length:79
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbF
Chain IDs:F, EA (auth: f)
Chain Length:32
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Psb31
Chain IDs:G, FA (auth: g)
Chain Length:179
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center protein H
Chain IDs:H, GA (auth: h)
Chain Length:65
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbI
Chain IDs:I, HA (auth: i)
Chain Length:34
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbJ
Chain IDs:J, IA (auth: j)
Chain Length:34
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbK
Chain IDs:K, JA (auth: k)
Chain Length:37
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbL
Chain IDs:L, KA (auth: l)
Chain Length:38
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbM
Chain IDs:M, LA (auth: m)
Chain Length:41
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Psb34
Chain IDs:N, MA (auth: n)
Chain Length:30
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Extrinsic protein in photosystem II
Chain IDs:O, NA (auth: o)
Chain Length:249
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:FCP-D
Chain IDs:P, OA (auth: p)
Chain Length:226
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Extrinsic protein in photosystem II
Chain IDs:Q, PA (auth: q)
Chain Length:211
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbG
Chain IDs:R, QA (auth: r)
Chain Length:73
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbT
Chain IDs:S (auth: T), RA (auth: t)
Chain Length:31
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Extrinsic protein in photosystem II
Chain IDs:T (auth: U), SA (auth: u)
Chain Length:93
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Cytochrome c-550
Chain IDs:U (auth: V), TA (auth: v)
Chain Length:137
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbW
Chain IDs:V (auth: W), UA (auth: w)
Chain Length:51
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:Photosystem II reaction center X protein
Chain IDs:W (auth: X), VA (auth: x)
Chain Length:35
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbY
Chain IDs:X (auth: Y), WA (auth: y)
Chain Length:33
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Polymer Type:polypeptide(L)
Description:PsbZ
Chain IDs:Y (auth: Z), XA (auth: z)
Chain Length:61
Number of Molecules:2
Biological Source:Chaetoceros gracilis
Primary Citation
The pigment-protein network of a diatom photosystem II-light-harvesting antenna supercomplex.
Science 365 ? ? (2019)
PMID: 31371578 DOI: 10.1126/science.aax4406

Abstact

Diatoms play important roles in global primary productivity and biogeochemical cycling of carbon, in part owing to the ability of their photosynthetic apparatus to adapt to rapidly changing light intensity. We report a cryo-electron microscopy structure of the photosystem II (PSII)-fucoxanthin (Fx) chlorophyll (Chl) a/c binding protein (FCPII) supercomplex from the centric diatom Chaetoceros gracilis The supercomplex comprises two protomers, each with two tetrameric and three monomeric FCPIIs around a PSII core that contains five extrinsic oxygen-evolving proteins at the lumenal surface. The structure reveals the arrangement of a huge pigment network that contributes to efficient light energy harvesting, transfer, and dissipation processes in the diatoms.

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Primary Citation of related structures