6JKY image
Deposition Date 2019-03-03
Release Date 2019-12-18
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6JKY
Title:
Crystal structure of MvcA-UBE2N-Ub complex from Legionella pneumophila
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.45 Å
R-Value Free:
0.25
R-Value Work:
0.20
R-Value Observed:
0.21
Space Group:
C 2 2 21
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:MvcA
Gene (Uniprot):lpg2148
Mutagens:C83A
Chain IDs:A, D
Chain Length:385
Number of Molecules:2
Biological Source:Legionella pneumophila subsp. pneumophila str. Philadelphia 1
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin-conjugating enzyme E2 N
Gene (Uniprot):UBE2N
Mutagens:K94A
Chain IDs:B, E
Chain Length:152
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ub
Gene (Uniprot):SMRZ_LOCUS12712
Chain IDs:C, F
Chain Length:79
Number of Molecules:2
Biological Source:Schistosoma margrebowiei
Primary Citation
Legionella pneumophila regulates the activity of UBE2N by deamidase-mediated deubiquitination.
Embo J. 39 e102806 e102806 (2020)
PMID: 31825121 DOI: 10.15252/embj.2019102806

Abstact

The Legionella pneumophila effector MavC induces ubiquitination of the E2 ubiquitin-conjugating enzyme UBE2N by transglutamination, thereby abolishing its function in the synthesis of K63 -type polyubiquitin chains. The inhibition of UBE2N activity creates a conundrum because this E2 enzyme is important in multiple signaling pathways, including some that are important for intracellular L. pneumophila replication. Here, we show that prolonged inhibition of UBE2N activity by MavC restricts intracellular bacterial replication and that the activity of UBE2N is restored by MvcA, an ortholog of MavC (50% identity) with ubiquitin deamidase activity. MvcA functions to deubiquitinate UBE2N-Ub using the same catalytic triad required for its deamidase activity. Structural analysis of the MvcA-UBE2N-Ub complex reveals a crucial role of the insertion domain in MvcA in substrate recognition. Our study establishes a deubiquitination mechanism catalyzed by a deamidase, which, together with MavC, imposes temporal regulation of the activity of UBE2N during L. pneumophila infection.

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