6JJP image
Deposition Date 2019-02-26
Release Date 2019-10-30
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6JJP
Keywords:
Title:
Crystal structure of Fab of a PD-1 monoclonal antibody MW11-h317 in complex with PD-1
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.90 Å
R-Value Free:
0.24
R-Value Work:
0.20
R-Value Observed:
0.20
Space Group:
P 1 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Heavy chain of MW11-h317
Chain IDs:A, D
Chain Length:220
Number of Molecules:2
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:light chain of MW11-h317
Chain IDs:B, E
Chain Length:214
Number of Molecules:2
Biological Source:Homo sapiens
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Programmed cell death protein 1
Gene (Uniprot):PDCD1
Chain IDs:C, F
Chain Length:147
Number of Molecules:2
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Identification of a monoclonal antibody that targets PD-1 in a manner requiring PD-1 Asn58 glycosylation.
Commun Biol 2 392 392 (2019)
PMID: 31667366 DOI: 10.1038/s42003-019-0642-9

Abstact

Programmed cell death 1 (PD-1) is inhibitory receptor and immune checkpoint protein. Blocking the interaction of PD-1 and its ligands PD-L1/ L2 is able to active T-cell-mediated antitumor response. Monoclonal antibody-based drugs targeting PD-1 pathway have exhibited great promise in cancer therapy. Here we show that MW11-h317, an anti-PD-1 monoclonal antibody, displays high affinity for PD-1 and blocks PD-1 interactions with PD-L1/L2. MW11-h317 can effectively induce T-cell-mediated immune response and inhibit tumor growth in mouse model. Crystal structure of PD-1/MW11-h317 Fab complex reveals that both the loops and glycosylation of PD-1 are involved in recognition and binding, in which Asn58 glycosylation plays a critical role. The unique glycan epitope in PD-1 to MW11-h317 is different from the first two approved clinical PD-1 antibodies, nivolumab and pembrolizumab. These results suggest MW11-h317 as a therapeutic monoclonal antibody of PD-1 glycosylation-targeting which may become efficient alternative for cancer therapy.

Legend

Protein

Chemical

Disease

Primary Citation of related structures