6JJJ image
Deposition Date 2019-02-26
Release Date 2019-08-14
Last Version Date 2024-11-06
Entry Detail
PDB ID:
6JJJ
Title:
Trimeric structure of Kupffer cell C-type lectin receptor Clec4f
Biological Source:
Source Organism:
Mus musculus (Taxon ID: 10090)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.79 Å
R-Value Free:
0.29
R-Value Work:
0.25
R-Value Observed:
0.25
Space Group:
P 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:C-type lectin domain family 4 member F
Gene (Uniprot):Clec4f
Chain IDs:A, B, C, D, E, F
Chain Length:160
Number of Molecules:6
Biological Source:Mus musculus
Ligand Molecules
Primary Citation
Trimeric structure of the mouse Kupffer cell C-type lectin receptor Clec4f.
Febs Lett. 594 189 198 (2020)
PMID: 31369681 DOI: 10.1002/1873-3468.13565

Abstact

The C-type lectin receptor Clec4f has been identified as a specific surface marker for Kupffer cells, although its ortholog is absent in humans and its biological function remains elusive. Here, we report the crystal structure of a truncated mouse trimeric Clec4f. The orientation between the carbohydrate-recognition domain of Clec4f and its neck region differs from other C-type lectins, resulting in an observed distance of 45 Å between the glycan-binding sites within the Clec4f trimer. Interestingly, the trimeric coiled-coil interface within its heptad neck region contains multiple polyglutamine interactions instead of the predominantly hydrophobic leucine zipper found in other C-type lectin receptors. The Clec4f trimeric structure displays unique features regarding its assembly and ligand recognition, shedding light on the evolution and diversity of the C-type lectin family.

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Disease

Primary Citation of related structures