6JII image
Deposition Date 2019-02-21
Release Date 2019-07-17
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6JII
Title:
Structure of RyR2 (F/A/C/L-Ca2+/apo-CaM-M dataset)
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Sus scrofa (Taxon ID: 9823)
Host Organism:
Method Details:
Experimental Method:
Resolution:
4.20 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Peptidyl-prolyl cis-trans isomerase FKBP1B
Gene (Uniprot):FKBP1B
Chain IDs:A, D, G, J
Chain Length:108
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Ryr2
Chain IDs:B, E, H, K
Chain Length:4968
Number of Molecules:4
Biological Source:Sus scrofa
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Calmodulin-1
Gene (Uniprot):CALM1
Mutagens:E32A,E68A,E105A,E141A
Chain IDs:C, F, I, L
Chain Length:149
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Modulation of cardiac ryanodine receptor 2 by calmodulin.
Nature 572 347 351 (2019)
PMID: 31278385 DOI: 10.1038/s41586-019-1377-y

Abstact

The high-conductance intracellular calcium (Ca2+) channel RyR2 is essential for the coupling of excitation and contraction in cardiac muscle. Among various modulators, calmodulin (CaM) regulates RyR2 in a Ca2+-dependent manner. Here we reveal the regulatory mechanism by which porcine RyR2 is modulated by human CaM through the structural determination of RyR2 under eight conditions. Apo-CaM and Ca2+-CaM bind to distinct but overlapping sites in an elongated cleft formed by the handle, helical and central domains. The shift in CaM-binding sites on RyR2 is controlled by Ca2+ binding to CaM, rather than to RyR2. Ca2+-CaM induces rotations and intradomain shifts of individual central domains, resulting in pore closure of the PCB95 and Ca2+-activated channel. By contrast, the pore of the ATP, caffeine and Ca2+-activated channel remains open in the presence of Ca2+-CaM, which suggests that Ca2+-CaM is one of the many competing modulators of RyR2 gating.

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Primary Citation of related structures