6JIC image
Entry Detail
PDB ID:
6JIC
Keywords:
Title:
Identification and Characterization of a carboxypeptidase inhibitor from Lycium barbarum
Biological Source:
Source Organism:
PDB Version:
Deposition Date:
2019-02-20
Release Date:
2020-02-26
Method Details:
Experimental Method:
Conformers Calculated:
100
Conformers Submitted:
10
Selection Criteria:
structures with the lowest energy
Macromolecular Entities
Polymer Type:polypeptide(L)
Description:WCI
Chain IDs:A
Chain Length:36
Number of Molecules:1
Biological Source:Lycium barbarum
Ligand Molecules
Primary Citation
Identification and characterization of a wolfberry carboxypeptidase inhibitor from Lycium barbarum.
Food Chem 351 129338 129338 (2021)
PMID: 33647700 DOI: 10.1016/j.foodchem.2021.129338

Abstact

Hyperstable cysteine-rich peptides (CRPs) represent an underexplored superfamily of bioactives in functional foods. An example is wolfberry of the Lycium barbarum family. Previously, we discovered a CRP, designated α-lybatide, from L. barbarum bark. Herein, we report the discovery of β-lybatide, a novel carboxypeptidase inhibitor belonging to a different CRP family from the wolfberry plant. Proteomic and transcriptomic analyses showed that β-lybatide contains 36 amino acids with six cysteine residues. NMR spectroscopy revealed that β-lybatide displays a knottin-like structure that renders it highly resistant to thermal, chemical and enzymatic degradation, conditions important for keeping its structural integrity in gastrointestinal tract. Biochemical assays showed that β-lybatide is a potent carboxypeptidase inhibitor which could contribute to the wolfberry biological activities. Bioinformatics analysis revealed an additional 49 β-lybatide-like plant carboxypeptidase inhibitors. Together, our results show that β-lybatide is the first and the smallest plant-derived hyperstable carboxypeptidase inhibitor discovered from a functional food.

Legend

Protein

Chemical

Disease

Primary Citation of related structures