6JFH image
Deposition Date 2019-02-08
Release Date 2019-04-10
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6JFH
Title:
The asymmetric-reconstructed cryo-EM structure of Zika virus-FabZK2B10 complex
Biological Source:
Source Organism:
Zika virus (Taxon ID: 64320)
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
20.00 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:ZIKV structural E protein
Chain IDs:A, C, E
Chain Length:501
Number of Molecules:3
Biological Source:Zika virus
Polymer Type:polypeptide(L)
Molecule:strutural protein M
Chain IDs:B, D, F
Chain Length:75
Number of Molecules:3
Biological Source:Zika virus
Polymer Type:polypeptide(L)
Molecule:FabZK2B10 heavy chain
Chain IDs:G (auth: H), I (auth: K), K (auth: M)
Chain Length:235
Number of Molecules:3
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:FabZK2B10 light chain
Chain IDs:H (auth: L), J (auth: I), L (auth: N)
Chain Length:214
Number of Molecules:3
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
Structural Basis for Neutralization and Protection by a Zika Virus-Specific Human Antibody.
Cell Rep 26 3360 3368.e5 (2019)
PMID: 30893607 DOI: 10.1016/j.celrep.2019.02.062

Abstact

We previously reported a human monoclonal antibody, ZK2B10, capable of protection against Zika virus (ZIKV) infection and microcephaly in developing mouse embryos. Here, we report the structural features and mechanism of action of ZK2B10. The crystal structure at a resolution of 2.32 Å revealed that the epitope is located on the lateral ridge of DIII of the envelope glycoprotein. Cryo-EM structure with mature ZIKV showed that the antibody binds to DIIIs around the icosahedral 2-fold, 3-fold, and 5-fold axes, a distinct feature compared to those reported for DIII-specific antibodies. The binding of ZK2B10 to ZIKV has no detectable effect on viral attachment to target cells or on conformational changes of the E glycoprotein in the acidic environment, suggesting that ZK2B10 functions at steps between the formation of the fusion intermediate and membrane fusion. These results provide structural and mechanistic insights into how ZK2B10 mediates protection against ZIKV infection.

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Primary Citation of related structures