6JDP image
Deposition Date 2019-02-02
Release Date 2019-03-20
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6JDP
Keywords:
Title:
the imm52 family protein TsiT (PA3908) from Pseudomonas aeruginosa
Biological Source:
Method Details:
Experimental Method:
Resolution:
1.60 Å
R-Value Free:
0.22
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
H 3
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Imm52 family protein
Gene (Uniprot):PA3908
Chain IDs:A
Chain Length:262
Number of Molecules:1
Biological Source:Pseudomonas aeruginosa (strain ATCC 15692 / DSM 22644 / CIP 104116 / JCM 14847 / LMG 12228 / 1C / PRS 101 / PAO1)
Primary Citation
Structural characterization of the Imm52 family protein TsiT in Pseudomonas aeruginosa.
Protein Sci. 28 971 975 (2019)
PMID: 30834616 DOI: 10.1002/pro.3597

Abstact

The bacterial type VI secretion system (T6SS) utilizes many toxic effectors to gain advantage over interbacterial competition and eukaryotic host infection. Meanwhile, the cognate immunity proteins of these effectors are employed to protect themselves from the virulence. TseT and TsiT form an effector-immunity (E-I) protein pair secreted by T6SS of Pseudomonas aeruginosa. TseT is toxic for other bacteria, whereas TsiT can suppress the virulence of TseT. Here, we report the crystal structure of TsiT at 1.6 Å resolution. TsiT is a typical α + β class protein and belongs to a novel Imm52 protein family of the polymorphic toxin system. Apart from TsiT, only one structure of the Imm52 family proteins is present in the Protein Data Bank (PDB), but that structure is not characterized and shares low sequence identity with TsiT. We characterized the basic features of TsiT structure and identified conserved residues of the Imm52 family proteins according to homology comparison. Our work provided structural information of a new protein family and should aid future functional studies.

Legend

Protein

Chemical

Disease

Primary Citation of related structures