6JBP image
Deposition Date 2019-01-26
Release Date 2020-01-29
Last Version Date 2024-11-20
Entry Detail
PDB ID:
6JBP
Keywords:
Title:
Structure of MP-4 from Mucuna pruriens at 2.22 Angstroms
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
2.22 Å
R-Value Free:
0.22
R-Value Work:
0.17
R-Value Observed:
0.18
Space Group:
P 31 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Kunitz-type trypsin inhibitor-like 2 protein
Gene (Uniprot):PIP20-2
Chain IDs:A (auth: B)
Chain Length:179
Number of Molecules:1
Biological Source:Mucuna pruriens
Primary Citation
The structure of MP-4 from Mucuna pruriens at 2.22 angstrom resolution.
Acta Crystallogr.,Sect.F 76 47 57 (2020)
PMID: 32039885 DOI: 10.1107/S2053230X20000199

Abstact

The structure of the MP-4 protein was previously determined at a resolution of 2.8 Å. Owing to the unavailability of gene-sequence information at the time, the side-chain assignment was carried out on the basis of a partial sequence available through Edman degradation, sequence homology to orthologs and electron density. The structure of MP-4 has now been determined at a higher resolution (2.22 Å) in another space group and all of the structural inferences that were presented in the previous report of the structure were validated. In addition, the present data allowed an improved assignment of side chains and enabled further analysis of the MP-4 structure, and the accuracy of the assignment was confirmed by the recently available gene sequence. The study reinforces the traditional concept that conservative interpretations of relatively low-resolution structures remain correct even with the availability of high-resolution data.

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