6JBC image
Deposition Date 2019-01-25
Release Date 2020-01-29
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6JBC
Keywords:
Title:
Phosphotransferase related to CoA biosynthesis pathway
Biological Source:
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.27
R-Value Work:
0.22
Space Group:
P 3 2 1
Macromolecular Entities
Structures with similar UniProt ID
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Pantoate kinase
Gene (Uniprot):TK2141
Chain IDs:A
Chain Length:300
Number of Molecules:1
Biological Source:Thermococcus kodakarensis (strain ATCC BAA-918 / JCM 12380 / KOD1)
Primary Citation
Crystal structure of pantoate kinase from Thermococcus kodakarensis.
Proteins 88 718 724 (2020)
PMID: 31697438 DOI: 10.1002/prot.25852

Abstact

The coenzyme A biosynthesis pathways in most archaea involve two unique enzymes, pantoate kinase and phosphopantothenate synthetase, to convert pantoate to 4'-phosphopantothenate. Here, we report the first crystal structure of pantoate kinase from the hyperthermophilic archaeon, Thermococcus kodakarensis and its complex with ATP and a magnesium ion. The electron density for the adenosine moiety of ATP was very weak, which most likely relates to its broad nucleotide specificity. Based on the structure of the active site that contains a glycerol molecule, the pantoate binding site and the roles of the highly conserved residues are suggested.

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Chemical

Disease

Primary Citation of related structures
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