6J99 image
Deposition Date 2019-01-22
Release Date 2019-02-27
Last Version Date 2025-04-09
Entry Detail
PDB ID:
6J99
Keywords:
TRANSCRIPTION
Title:
Cryo-EM structure of human DOT1L in complex with an H2B-monoubiquitinated nucleosome
Biological Source:
Source Organism:
Xenopus laevis (Taxon ID: 8355)
Homo sapiens (Taxon ID: 9606)
synthetic construct (Taxon ID: 32630)
Host Organism:
Escherichia coli
Method Details:
Experimental Method:
ELECTRON MICROSCOPY
Resolution:
4.10 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
6J99 validation report
Macromolecular Entities
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H3
Gene (Uniprot):LOC121398065
Chain IDs:A, E
Chain Length:136
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:A0A310TTQ1 Pfam ID:PF00125
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H4
Chain IDs:B, F
Chain Length:103
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:P62799 Pfam ID:PF15511
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2A
Gene (Uniprot):LOC494591
Chain IDs:C, G
Chain Length:130
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:Q6AZJ8 Pfam ID:PF00125, PF16211
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone H2B 1.1
Mutations:S29T, K117C
Chain IDs:D, H
Chain Length:123
Number of Molecules:2
Biological Source:Xenopus laevis
UniProt ID:P02281 Pfam ID:PF00125
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (144-MER)
Chain IDs:I
Chain Length:147
Number of Molecules:1
Biological Source:synthetic construct
Polymer Type:polydeoxyribonucleotide
Molecule:DNA (145-MER)
Chain IDs:J
Chain Length:147
Number of Molecules:1
Biological Source:synthetic construct
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Histone-lysine N-methyltransferase, H3 lysine-79 specific
Gene (Uniprot):DOT1L
Chain IDs:L (auth: K)
Chain Length:416
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:Q8TEK3 Pfam ID:PF08123 EC:2.1.1.355
Protein Blast
Polymer Type:polypeptide(L)
Molecule:Ubiquitin
Gene (Uniprot):RPS27A
Mutations:G76C
Chain IDs:K (auth: L)
Chain Length:76
Number of Molecules:1
Biological Source:Homo sapiens
UniProt ID:P62979 Pfam ID:PF00240
Ligand Molecules
SAH
Primary Citation
Structural basis of the crosstalk between histone H2B monoubiquitination and H3 lysine 79 methylation on nucleosome.
Cell Res. 29 330 333 (2019)
PMID: 30770869 DOI: 10.1038/s41422-019-0146-7
Primary Citation of related structures
6J99