6J6K image
Deposition Date 2019-01-15
Release Date 2019-05-29
Last Version Date 2025-07-02
Entry Detail
PDB ID:
6J6K
Title:
Apo-state streptavidin
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.30 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Streptavidin
Chain IDs:A, B, C, D
Chain Length:119
Number of Molecules:4
Biological Source:Streptomyces avidinii
Ligand Molecules
Primary Citation
Single particle cryo-EM reconstruction of 52 kDa streptavidin at 3.2 Angstrom resolution.
Nat Commun 10 2386 2386 (2019)
PMID: 31160591 DOI: 10.1038/s41467-019-10368-w

Abstact

The fast development of single-particle cryogenic electron microscopy (cryo-EM) has made it more feasible to obtain the 3D structure of well-behaved macromolecules with a molecular weight higher than 300 kDa at ~3 Å resolution. However, it remains a challenge to obtain the high-resolution structures of molecules smaller than 200 kDa using single-particle cryo-EM. In this work, we apply the Cs-corrector-VPP-coupled cryo-EM to study the 52 kDa streptavidin (SA) protein supported on a thin layer of graphene and embedded in vitreous ice. We are able to solve both the apo-SA and biotin-bound SA structures at near-atomic resolution using single-particle cryo-EM. We demonstrate that the method has the potential to determine the structures of molecules as small as 39 kDa.

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Primary Citation of related structures