6J5L image
Deposition Date 2019-01-11
Release Date 2019-07-17
Last Version Date 2023-11-22
Entry Detail
PDB ID:
6J5L
Keywords:
Title:
Crystal structure of Trk-A in complex with the Pan-Trk Kinase Inhibitor, compound 10e
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Host Organism:
Method Details:
Experimental Method:
Resolution:
2.30 Å
R-Value Free:
0.25
R-Value Work:
0.22
R-Value Observed:
0.22
Space Group:
H 3 2
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:High affinity nerve growth factor receptor
Gene (Uniprot):NTRK1
Chain IDs:A
Chain Length:303
Number of Molecules:1
Biological Source:Homo sapiens
Ligand Molecules
Primary Citation
The discovery of novel 3-aryl-indazole derivatives as peripherally restricted pan-Trk inhibitors for the treatment of pain.
Bioorg.Med.Chem.Lett. 29 2320 2326 (2019)
PMID: 31235262 DOI: 10.1016/j.bmcl.2019.06.018

Abstact

The design, synthesis, and biological evaluation of novel 3-aryl-indazole derivatives as peripherally selective pan-Trk inhibitors are described. Three strategies were used to obtain a potent compound exhibiting low central nervous system (CNS) penetration and high plasma exposure: 1) a structure-based drug design (SBDD) approach was used to improve potency; 2) a substrate for an efflux transporter for lowering brain penetration was explored; and 3) the most basic pKa (pKa-MB) value was used as an indicator to identify compounds with good membrane permeability. This enabled the identification of the peripherally targeted 17c with the potency, kinase-selectivity, and plasma exposure required to demonstrate in vivo efficacy in a Complete Freund's adjuvant (CFA)-induced thermal hypersensitivity model.

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Primary Citation of related structures