6J4Q image
Deposition Date 2019-01-10
Release Date 2019-05-01
Last Version Date 2024-10-23
Entry Detail
PDB ID:
6J4Q
Keywords:
Title:
Structural basis of tubulin detyrosination by vasohibins-SVBP enzyme complex and functional implications
Biological Source:
Source Organism:
Homo sapiens (Taxon ID: 9606)
Method Details:
Experimental Method:
Resolution:
2.70 Å
R-Value Free:
0.24
R-Value Work:
0.18
R-Value Observed:
0.18
Space Group:
P 32 2 1
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:Tubulinyl-Tyr carboxypeptidase 2
Gene (Uniprot):VASH2
Chain IDs:A, C, E (auth: F), G (auth: J)
Chain Length:251
Number of Molecules:4
Biological Source:Homo sapiens
Polymer Type:polypeptide(L)
Molecule:Small vasohibin-binding protein
Gene (Uniprot):SVBP
Chain IDs:B, D, F (auth: G), H (auth: K)
Chain Length:66
Number of Molecules:4
Biological Source:Homo sapiens
Primary Citation
Structural basis of tubulin detyrosination by the vasohibin-SVBP enzyme complex.
Nat.Struct.Mol.Biol. 26 571 582 (2019)
PMID: 31235911 DOI: 10.1038/s41594-019-0241-y

Abstact

Vasohibins are tubulin tyrosine carboxypeptidases that are important in neuron physiology. We examined the crystal structures of human vasohibin 1 and 2 in complex with small vasohibin-binding protein (SVBP) in the absence and presence of different inhibitors and a C-terminal α-tubulin peptide. In combination with functional data, we propose that SVBP acts as an activator of vasohibins. An extended groove and a distinctive surface residue patch of vasohibins define the specific determinants for recognizing and cleaving the C-terminal tyrosine of α-tubulin and for binding microtubules, respectively. The vasohibin-SVBP interaction and the ability of the enzyme complex to associate with microtubules regulate axon specification of neurons. Our results define the structural basis of tubulin detyrosination by vasohibins and show the relevance of this process for neuronal development. Our findings offer a unique platform for developing drugs against human conditions with abnormal tubulin tyrosination levels, such as cancer, heart defects and possibly brain disorders.

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Primary Citation of related structures