6J3Q image
Deposition Date 2019-01-05
Release Date 2019-10-02
Last Version Date 2024-03-27
Entry Detail
PDB ID:
6J3Q
Keywords:
Title:
Capsid structure of a freshwater cyanophage Siphoviridae Mic1
Biological Source:
Source Organism:
Method Details:
Experimental Method:
Resolution:
3.53 Å
Aggregation State:
PARTICLE
Reconstruction Method:
SINGLE PARTICLE
Macromolecular Entities
Polymer Type:polypeptide(L)
Molecule:cement protein
Chain IDs:N (auth: 0), O (auth: 3), P (auth: 1), Q (auth: 4), R (auth: 2), S (auth: 6), T (auth: 5), U (auth: 7), V (auth: b), W (auth: 8), X (auth: c), Y (auth: 9), Z (auth: d)
Chain Length:99
Number of Molecules:13
Biological Source:Microcystis phage Mic1
Polymer Type:polypeptide(L)
Molecule:major capsid protein
Chain IDs:A, B, C, D, E, F, G (auth: U), H (auth: V), I (auth: W), J (auth: X), K (auth: Y), L (auth: Z), M (auth: a)
Chain Length:348
Number of Molecules:13
Biological Source:Microcystis phage Mic1
Ligand Molecules
Primary Citation
Capsid Structure of a Freshwater Cyanophage Siphoviridae Mic1.
Structure 27 1508 ? (2019)
PMID: 31378451 DOI: 10.1016/j.str.2019.07.003

Abstact

Cyanobacteria are the most abundant photosynthetic microorganisms, the global distribution of which is mainly regulated by the corresponding cyanophages. A systematic screening of water samples in the Lake Chaohu enabled us to isolate a freshwater siphocyanophage that infects Microcystis wesenbergii, thus termed Mic1. Using cryoelectron microscopy, we solved the 3.5-Å structure of Mic1 capsid. The major capsid protein gp40 of an HK97-like fold forms two types of capsomers, hexons and pentons. The capsomers interact with each other via the interweaved N-terminal arms of gp40 in addition to a tail-in-mouth joint along the three-fold symmetric axis, resulting in the assembly of capsid in a mortise-and-tenon pattern. The novel-fold cement protein gp47 sticks at the two-fold symmetric axis and further fixes the capsid. These findings provide structural insights into the assembly of cyanophages, and set up a platform to explore the mechanism of specific interactions and co-evolution with cyanobacteria.

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Primary Citation of related structures